miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 110078 0.68 0.958861
Target:  5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3'
miRNA:   3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 18308 0.68 0.959237
Target:  5'- --gUCCGCGUGuu-UGACCAcGCGCa -3'
miRNA:   3'- caaAGGCGCGCugcACUGGUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 107677 0.68 0.959237
Target:  5'- ---gUCGCGCGACGaaACCuuGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCacUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 43365 0.68 0.959237
Target:  5'- -aUUUCGCGcCGugGUGuuGCCGcAGCACg -3'
miRNA:   3'- caAAGGCGC-GCugCAC--UGGU-UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 81224 0.68 0.959237
Target:  5'- ---aCUGCGUGAUGcGACUguucaaAAGCACCa -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGG------UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32084 0.68 0.962873
Target:  5'- ----aCGUGCGGCGUGugCGAauuuaAUACUa -3'
miRNA:   3'- caaagGCGCGCUGCACugGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 33466 0.68 0.962873
Target:  5'- --gUCCGCacgGCGGCGUGcucGCCGacGACAUg -3'
miRNA:   3'- caaAGGCG---CGCUGCAC---UGGU--UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 80718 0.68 0.966276
Target:  5'- ----aCGCaC-AUGUGGCCGAGCACCg -3'
miRNA:   3'- caaagGCGcGcUGCACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 8493 0.68 0.966276
Target:  5'- -gUUCCgcaaGCGCGGCGUGGuagCAGACgaaACCa -3'
miRNA:   3'- caAAGG----CGCGCUGCACUg--GUUUG---UGG- -5'
21186 3' -51.3 NC_004778.3 + 7147 0.68 0.969454
Target:  5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3'
miRNA:   3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 119383 0.68 0.969454
Target:  5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3'
miRNA:   3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 103066 0.68 0.966276
Target:  5'- ----gUGUGCuACGUGACCAAACuggauGCCg -3'
miRNA:   3'- caaagGCGCGcUGCACUGGUUUG-----UGG- -5'
21186 3' -51.3 NC_004778.3 + 91590 0.68 0.966276
Target:  5'- --gUCUGCGCGugcGCGUcGA-UAAGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCA-CUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 90494 0.68 0.966276
Target:  5'- ----gUGCGCGGCGgcGACC--ACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCa-CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 26022 0.68 0.964942
Target:  5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3'
miRNA:   3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 72640 0.68 0.959237
Target:  5'- -cUUCCGuUGCGACaUGACgCAGAUgggGCCg -3'
miRNA:   3'- caAAGGC-GCGCUGcACUG-GUUUG---UGG- -5'
21186 3' -51.3 NC_004778.3 + 67821 0.68 0.959237
Target:  5'- ---gCUGCGCGGC---GCCAAACGCUu -3'
miRNA:   3'- caaaGGCGCGCUGcacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 55995 0.68 0.959237
Target:  5'- aGUggcgCCGCGuUGGCGUcGAUUAGACACa -3'
miRNA:   3'- -CAaa--GGCGC-GCUGCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 45209 0.68 0.959237
Target:  5'- uGUUUuuGCGCGACGaauuuAUCAAACaaguGCCg -3'
miRNA:   3'- -CAAAggCGCGCUGCac---UGGUUUG----UGG- -5'
21186 3' -51.3 NC_004778.3 + 95642 0.68 0.958861
Target:  5'- --gUCCGUGUaaugguucuuuauGACGUGcgcuucAUCGAGCACCa -3'
miRNA:   3'- caaAGGCGCG-------------CUGCAC------UGGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.