Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21186 | 3' | -51.3 | NC_004778.3 | + | 33677 | 0.69 | 0.926917 |
Target: 5'- ---gCCGCGagugGugGUGACCAcguauGACACg -3' miRNA: 3'- caaaGGCGCg---CugCACUGGU-----UUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 34418 | 0.69 | 0.926917 |
Target: 5'- --cUCCggcaGCGCGGCGUGcCCGuACugCu -3' miRNA: 3'- caaAGG----CGCGCUGCACuGGUuUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 65259 | 0.69 | 0.926917 |
Target: 5'- uGUUUCgGCGCgcaauuguacGACGUGAUgGAcgcccaccGCGCCa -3' miRNA: 3'- -CAAAGgCGCG----------CUGCACUGgUU--------UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 98189 | 0.69 | 0.926917 |
Target: 5'- aGUUUCUcgGCGCGAgGUGcgcgcGCCAcggacagcAACGCCu -3' miRNA: 3'- -CAAAGG--CGCGCUgCAC-----UGGU--------UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 17859 | 0.69 | 0.932291 |
Target: 5'- ---aCCGCGCGccgucCGUGACUuuggcGCGCCc -3' miRNA: 3'- caaaGGCGCGCu----GCACUGGuu---UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 10705 | 0.69 | 0.93741 |
Target: 5'- uGUgcgCCGcCGCGcCGaGGCCAAGCGCa -3' miRNA: 3'- -CAaa-GGC-GCGCuGCaCUGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 61374 | 0.69 | 0.942274 |
Target: 5'- ---gCCgGCGCGuCGUcGCUGAGCGCCa -3' miRNA: 3'- caaaGG-CGCGCuGCAcUGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 4869 | 0.69 | 0.942274 |
Target: 5'- -gUUgCGCGCGcgccuACGUGACUcgGCGCg -3' miRNA: 3'- caAAgGCGCGC-----UGCACUGGuuUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 57923 | 0.69 | 0.942274 |
Target: 5'- -cUUCCGC-CGACacccUGGCCA-ACGCCu -3' miRNA: 3'- caAAGGCGcGCUGc---ACUGGUuUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 70191 | 0.69 | 0.944149 |
Target: 5'- aGUUUgCGCGCGAgcagaaaauuaucuaCGgcgcCCAAGCGCCg -3' miRNA: 3'- -CAAAgGCGCGCU---------------GCacu-GGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 26069 | 0.69 | 0.946886 |
Target: 5'- ---aCCGC-CGuCGUGGCCAcGGCGCUg -3' miRNA: 3'- caaaGGCGcGCuGCACUGGU-UUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 124766 | 0.69 | 0.946886 |
Target: 5'- --cUCCGUGCGgccGCGUuAUCGAcgGCACCa -3' miRNA: 3'- caaAGGCGCGC---UGCAcUGGUU--UGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 32832 | 0.69 | 0.951248 |
Target: 5'- aGUUUCgGaCGCGgcuggccuACGUGGCC-GACAUCg -3' miRNA: 3'- -CAAAGgC-GCGC--------UGCACUGGuUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 103457 | 0.69 | 0.951248 |
Target: 5'- ----gCGUGCGACGUGcagcacGCUcAACGCCg -3' miRNA: 3'- caaagGCGCGCUGCAC------UGGuUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 38033 | 0.68 | 0.954963 |
Target: 5'- ---cUCGCGCGaACGUGuuuagauaacuacACgCAAACACCu -3' miRNA: 3'- caaaGGCGCGC-UGCAC-------------UG-GUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 53374 | 0.68 | 0.955364 |
Target: 5'- aGUUUuuGCGCugUGUGGCCAaagaGACugCu -3' miRNA: 3'- -CAAAggCGCGcuGCACUGGU----UUGugG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 6772 | 0.68 | 0.955364 |
Target: 5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3' miRNA: 3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 110078 | 0.68 | 0.958861 |
Target: 5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3' miRNA: 3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 95642 | 0.68 | 0.958861 |
Target: 5'- --gUCCGUGUaaugguucuuuauGACGUGcgcuucAUCGAGCACCa -3' miRNA: 3'- caaAGGCGCG-------------CUGCAC------UGGUUUGUGG- -5' |
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21186 | 3' | -51.3 | NC_004778.3 | + | 18308 | 0.68 | 0.959237 |
Target: 5'- --gUCCGCGUGuu-UGACCAcGCGCa -3' miRNA: 3'- caaAGGCGCGCugcACUGGUuUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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