miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 47405 0.75 0.699677
Target:  5'- ----aCGCGCGcGCGUgGACCAcGCGCCa -3'
miRNA:   3'- caaagGCGCGC-UGCA-CUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95462 0.75 0.696556
Target:  5'- ---cCCGCacccCGACGUGACCGAaauuucguuggccgGCACCg -3'
miRNA:   3'- caaaGGCGc---GCUGCACUGGUU--------------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95000 0.75 0.678778
Target:  5'- cUUUCCGCGCGcgcCGUGcGCCGAcgggcagguGCGCCu -3'
miRNA:   3'- cAAAGGCGCGCu--GCAC-UGGUU---------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 2389 0.75 0.667208
Target:  5'- -cUUCCGCGCG--GUGGCCGAcgugcccGCGCCc -3'
miRNA:   3'- caAAGGCGCGCugCACUGGUU-------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 80135 0.77 0.573287
Target:  5'- ---gUCGCGCGACGgGACgGGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 86362 0.71 0.859416
Target:  5'- --aUCgGCGCGACc---CCAAGCACCu -3'
miRNA:   3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 5956 0.71 0.874842
Target:  5'- -cUUCCuCGCuGAUGUGACCGuGCGCg -3'
miRNA:   3'- caAAGGcGCG-CUGCACUGGUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 61374 0.69 0.942274
Target:  5'- ---gCCgGCGCGuCGUcGCUGAGCGCCa -3'
miRNA:   3'- caaaGG-CGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65259 0.69 0.926917
Target:  5'- uGUUUCgGCGCgcaauuguacGACGUGAUgGAcgcccaccGCGCCa -3'
miRNA:   3'- -CAAAGgCGCG----------CUGCACUGgUU--------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 34418 0.69 0.926917
Target:  5'- --cUCCggcaGCGCGGCGUGcCCGuACugCu -3'
miRNA:   3'- caaAGG----CGCGCUGCACuGGUuUGugG- -5'
21186 3' -51.3 NC_004778.3 + 33677 0.69 0.926917
Target:  5'- ---gCCGCGagugGugGUGACCAcguauGACACg -3'
miRNA:   3'- caaaGGCGCg---CugCACUGGU-----UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 15072 0.69 0.926917
Target:  5'- --cUCCGC-C-ACGUGACCGAGCAa- -3'
miRNA:   3'- caaAGGCGcGcUGCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 57488 0.69 0.926917
Target:  5'- ---gCCGCGCGACGgaaaaGCCGAcaugGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCac---UGGUU----UGUGg -5'
21186 3' -51.3 NC_004778.3 + 15457 0.7 0.915402
Target:  5'- --cUCCGCGCGACcacgccaaaGUGcuGCCGcGCAUCu -3'
miRNA:   3'- caaAGGCGCGCUG---------CAC--UGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 74119 0.7 0.915402
Target:  5'- ---gCUGCGCGGCGUGcCCGAuCAUUu -3'
miRNA:   3'- caaaGGCGCGCUGCACuGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 34392 0.7 0.915402
Target:  5'- aGUUUuuGCaGCu-CGUGGCCGGGCugCu -3'
miRNA:   3'- -CAAAggCG-CGcuGCACUGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 95776 0.7 0.90287
Target:  5'- --aUCCGCGCGGCagcgcgccGGCCGcgcuGCGCCc -3'
miRNA:   3'- caaAGGCGCGCUGca------CUGGUu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61660 0.71 0.88221
Target:  5'- ---gCCGCGCGcAUGcugGGCCAGcCGCCg -3'
miRNA:   3'- caaaGGCGCGC-UGCa--CUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 56993 0.71 0.88221
Target:  5'- ---cCUGUGCGGCG-GGCCAGGCgaguuuGCCg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGGUUUG------UGG- -5'
21186 3' -51.3 NC_004778.3 + 38299 0.71 0.88221
Target:  5'- ---gCCaGCGCGcACGcGACCGcGCGCCg -3'
miRNA:   3'- caaaGG-CGCGC-UGCaCUGGUuUGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.