miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 41220 0.66 0.984172
Target:  5'- -gUUUCGCGUuuGACGggcGGCC--GCGCCg -3'
miRNA:   3'- caAAGGCGCG--CUGCa--CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 119188 0.66 0.984172
Target:  5'- ---cCCGCGCGcaaucggcGCGcUGcgcACUAAACACCu -3'
miRNA:   3'- caaaGGCGCGC--------UGC-AC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 46214 0.66 0.984172
Target:  5'- uUUUUCGuCGCGGCGc-ACCAucACGCCu -3'
miRNA:   3'- cAAAGGC-GCGCUGCacUGGUu-UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 33360 0.66 0.984172
Target:  5'- ---gCCGCggGCGACGUcgcgGACgAcGCGCCg -3'
miRNA:   3'- caaaGGCG--CGCUGCA----CUGgUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 14283 0.66 0.984172
Target:  5'- ---gCCGCGaagucaACGUGGCCAccAACACg -3'
miRNA:   3'- caaaGGCGCgc----UGCACUGGU--UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 89334 0.66 0.983982
Target:  5'- uUUUCCGUGggccgauugcCGACGUcgcuuugugguucGACCAGACugUa -3'
miRNA:   3'- cAAAGGCGC----------GCUGCA-------------CUGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 56917 0.67 0.982196
Target:  5'- --gUCCGCGCuGC-UGGCgCAAACugGCCg -3'
miRNA:   3'- caaAGGCGCGcUGcACUG-GUUUG--UGG- -5'
21186 3' -51.3 NC_004778.3 + 17604 0.67 0.982196
Target:  5'- ---aCUGCGCGAUuuUGACUAuacGGCGCCc -3'
miRNA:   3'- caaaGGCGCGCUGc-ACUGGU---UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124997 0.67 0.982196
Target:  5'- ---gCCGCGCGAUuccgGACgaAGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGca--CUGg-UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124502 0.67 0.981989
Target:  5'- ---cCCGUGCGucgagucACGUaGGCCGAuaaacACGCCg -3'
miRNA:   3'- caaaGGCGCGC-------UGCA-CUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65299 0.67 0.98178
Target:  5'- -----gGCGCGACGcgcugagUGACCGuugcuugGGCGCCg -3'
miRNA:   3'- caaaggCGCGCUGC-------ACUGGU-------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 114914 0.67 0.977698
Target:  5'- --gUCCgGCaCGACGUGACgCAcGCGCg -3'
miRNA:   3'- caaAGG-CGcGCUGCACUG-GUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 46184 0.67 0.977698
Target:  5'- -gUUCCGCGCGucugcaacaACGcaGCCAAuCGCCc -3'
miRNA:   3'- caAAGGCGCGC---------UGCacUGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61986 0.67 0.977698
Target:  5'- ---gCCGCuGCG-CGUGGCCAauuggGACAUg -3'
miRNA:   3'- caaaGGCG-CGCuGCACUGGU-----UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 59604 0.67 0.975157
Target:  5'- ---gCCGCGCcACuUGGCCGAAaACCg -3'
miRNA:   3'- caaaGGCGCGcUGcACUGGUUUgUGG- -5'
21186 3' -51.3 NC_004778.3 + 52627 0.67 0.975157
Target:  5'- ---aUCGCGCGGCGaauagucGCgGAACGCCu -3'
miRNA:   3'- caaaGGCGCGCUGCac-----UGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 21254 0.67 0.975157
Target:  5'- --gUCCGCGCGGCagguUGAgCAgAugGCCc -3'
miRNA:   3'- caaAGGCGCGCUGc---ACUgGU-UugUGG- -5'
21186 3' -51.3 NC_004778.3 + 7147 0.68 0.969454
Target:  5'- --aUCCGUcucggcggGCGGCGc-GCCGAGCACUa -3'
miRNA:   3'- caaAGGCG--------CGCUGCacUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 119383 0.68 0.969454
Target:  5'- aGUUUaCUGCGuCGGaguaUGUGACCGGuuuucGCGCCg -3'
miRNA:   3'- -CAAA-GGCGC-GCU----GCACUGGUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 80718 0.68 0.966276
Target:  5'- ----aCGCaC-AUGUGGCCGAGCACCg -3'
miRNA:   3'- caaagGCGcGcUGCACUGGUUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.