miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21187 5' -50.4 NC_004778.3 + 121886 1.09 0.007696
Target:  5'- uCUGCAACGCCAGCAAGCAAAUUCGCGc -3'
miRNA:   3'- -GACGUUGCGGUCGUUCGUUUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 120597 0.85 0.235518
Target:  5'- gCUGCGACGCCAGCAGcuCAAAUUCGUu -3'
miRNA:   3'- -GACGUUGCGGUCGUUc-GUUUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 98065 0.79 0.469052
Target:  5'- gUGCGGCGCCAGCAcuuuGGCAGccUCGUa -3'
miRNA:   3'- gACGUUGCGGUCGU----UCGUUuaAGCGc -5'
21187 5' -50.4 NC_004778.3 + 33344 0.78 0.530459
Target:  5'- gCUGCAAgaauuuuuCGCC-GCGGGCGAcgUCGCGg -3'
miRNA:   3'- -GACGUU--------GCGGuCGUUCGUUuaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 95696 0.77 0.583747
Target:  5'- gUGCcGCGCCAGCAAuccGCu--UUCGCGg -3'
miRNA:   3'- gACGuUGCGGUCGUU---CGuuuAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 72235 0.77 0.583747
Target:  5'- -aGCucCGUCGGCAAGCAccAAUUCGCa -3'
miRNA:   3'- gaCGuuGCGGUCGUUCGU--UUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 32276 0.76 0.615165
Target:  5'- -aGCAGCGCCaacgcccAGCAAuGCAccaAGUUCGCGa -3'
miRNA:   3'- gaCGUUGCGG-------UCGUU-CGU---UUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 28715 0.75 0.670567
Target:  5'- gCUGCAGCGCU-GCAAGCGAuugaacaCGCGu -3'
miRNA:   3'- -GACGUUGCGGuCGUUCGUUuaa----GCGC- -5'
21187 5' -50.4 NC_004778.3 + 117553 0.75 0.681365
Target:  5'- uUGCAACGCCGGUu-GCAAGcgUGCGu -3'
miRNA:   3'- gACGUUGCGGUCGuuCGUUUaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 26530 0.75 0.71344
Target:  5'- -gGCAaguuggGCGCCGGCAAGUAu-UUCGCu -3'
miRNA:   3'- gaCGU------UGCGGUCGUUCGUuuAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 93632 0.74 0.720833
Target:  5'- gUGCGGCGCCGGguCGGGCAGccgaaacacacaccAUUCGCa -3'
miRNA:   3'- gACGUUGCGGUC--GUUCGUU--------------UAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 101660 0.74 0.723989
Target:  5'- gUGCAGCGCgGGCAGGUugauGAAguugUCGCu -3'
miRNA:   3'- gACGUUGCGgUCGUUCG----UUUa---AGCGc -5'
21187 5' -50.4 NC_004778.3 + 99023 0.74 0.73445
Target:  5'- -cGCAACGcCCGGCAAcGCG---UCGCGg -3'
miRNA:   3'- gaCGUUGC-GGUCGUU-CGUuuaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 90022 0.73 0.775177
Target:  5'- -aGCGGCGCCGGUGcuCAAAUUCGUc -3'
miRNA:   3'- gaCGUUGCGGUCGUucGUUUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 55283 0.73 0.794718
Target:  5'- -cGCAGCGCCAGCAcGU----UCGUGa -3'
miRNA:   3'- gaCGUUGCGGUCGUuCGuuuaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 40019 0.73 0.794718
Target:  5'- -gGC-ACGUCGGCGAGCGAgcacugcaaAUUCGUGg -3'
miRNA:   3'- gaCGuUGCGGUCGUUCGUU---------UAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 64876 0.73 0.804244
Target:  5'- uUGaauAUGCCAGCGGGCAAAUgaucUGCGa -3'
miRNA:   3'- gACgu-UGCGGUCGUUCGUUUAa---GCGC- -5'
21187 5' -50.4 NC_004778.3 + 90908 0.73 0.813596
Target:  5'- aCUGCGACGCCAa-AGGCGugAGUUUGCa -3'
miRNA:   3'- -GACGUUGCGGUcgUUCGU--UUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 78489 0.72 0.82276
Target:  5'- -aGCAACG-CAGCGAGCuaaaAAAgugUCGCGa -3'
miRNA:   3'- gaCGUUGCgGUCGUUCG----UUUa--AGCGC- -5'
21187 5' -50.4 NC_004778.3 + 60976 0.72 0.849043
Target:  5'- -gGCAACGCCGGCGgcGGCGGcggCgGCGg -3'
miRNA:   3'- gaCGUUGCGGUCGU--UCGUUuaaG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.