miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21187 5' -50.4 NC_004778.3 + 137 0.68 0.967148
Target:  5'- aCUGCGGCGCguccgcggcguaCAGCGccAGCAuuuGUUCgGCGu -3'
miRNA:   3'- -GACGUUGCG------------GUCGU--UCGUu--UAAG-CGC- -5'
21187 5' -50.4 NC_004778.3 + 814 0.67 0.978606
Target:  5'- -aGCAACGgCGGCGgaGGCGGAg--GCGg -3'
miRNA:   3'- gaCGUUGCgGUCGU--UCGUUUaagCGC- -5'
21187 5' -50.4 NC_004778.3 + 895 0.67 0.978606
Target:  5'- -aGCAACGgCGGCGgaGGCGGAg--GCGg -3'
miRNA:   3'- gaCGUUGCgGUCGU--UCGUUUaagCGC- -5'
21187 5' -50.4 NC_004778.3 + 1692 0.69 0.951911
Target:  5'- -aGCAGCGCgAGCAGGCGcAUgcccgacaUGCGu -3'
miRNA:   3'- gaCGUUGCGgUCGUUCGUuUAa-------GCGC- -5'
21187 5' -50.4 NC_004778.3 + 4046 0.68 0.967148
Target:  5'- gUGUu-CGCCGGCGGGCAGGccgagCGCc -3'
miRNA:   3'- gACGuuGCGGUCGUUCGUUUaa---GCGc -5'
21187 5' -50.4 NC_004778.3 + 5232 0.7 0.902274
Target:  5'- -gGCGACaCCAGCGAGCcGGUgacuUUGCGg -3'
miRNA:   3'- gaCGUUGcGGUCGUUCGuUUA----AGCGC- -5'
21187 5' -50.4 NC_004778.3 + 6253 0.69 0.951911
Target:  5'- uUGCAGCGCgGGCAaauuGGCAAcgaccUCGUa -3'
miRNA:   3'- gACGUUGCGgUCGU----UCGUUua---AGCGc -5'
21187 5' -50.4 NC_004778.3 + 8146 0.66 0.991163
Target:  5'- uCUGCAGCGgguucaacuaCCAGCAggAGCAAAcggUGUGc -3'
miRNA:   3'- -GACGUUGC----------GGUCGU--UCGUUUaa-GCGC- -5'
21187 5' -50.4 NC_004778.3 + 8466 0.7 0.908863
Target:  5'- -gGCGGCGCCGGgGcAGCGGg--CGCGg -3'
miRNA:   3'- gaCGUUGCGGUCgU-UCGUUuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 10225 0.66 0.986798
Target:  5'- -cGCAAuUGgCGGCGAGCAGGUguuuagugCGCa -3'
miRNA:   3'- gaCGUU-GCgGUCGUUCGUUUAa-------GCGc -5'
21187 5' -50.4 NC_004778.3 + 16296 0.69 0.93778
Target:  5'- uUGUAAacgUGCCGGCAGGCGucggCGUGa -3'
miRNA:   3'- gACGUU---GCGGUCGUUCGUuuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 17191 0.71 0.863064
Target:  5'- aCUGCAcggACGCCaaaaucuacgagacGGCGGugcGCGAGUUCGUGg -3'
miRNA:   3'- -GACGU---UGCGG--------------UCGUU---CGUUUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 18552 0.66 0.985024
Target:  5'- -gGCcaGGCGCUGGCcAGC-AGUUCGCu -3'
miRNA:   3'- gaCG--UUGCGGUCGuUCGuUUAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 21965 0.68 0.960029
Target:  5'- -gGCGGCGUUAGCG-GCAAAUUgacaaaCGCGc -3'
miRNA:   3'- gaCGUUGCGGUCGUuCGUUUAA------GCGC- -5'
21187 5' -50.4 NC_004778.3 + 25147 0.68 0.956097
Target:  5'- uUGCGGCGCguGCAAaccuGCAcGUUCuuGCGg -3'
miRNA:   3'- gACGUUGCGguCGUU----CGUuUAAG--CGC- -5'
21187 5' -50.4 NC_004778.3 + 26530 0.75 0.71344
Target:  5'- -gGCAaguuggGCGCCGGCAAGUAu-UUCGCu -3'
miRNA:   3'- gaCGU------UGCGGUCGUUCGUuuAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 28438 0.66 0.990786
Target:  5'- gCUGCAGCGCUccuGCAAGggucguucagauuuCAAAgUCGCc -3'
miRNA:   3'- -GACGUUGCGGu--CGUUC--------------GUUUaAGCGc -5'
21187 5' -50.4 NC_004778.3 + 28715 0.75 0.670567
Target:  5'- gCUGCAGCGCU-GCAAGCGAuugaacaCGCGu -3'
miRNA:   3'- -GACGUUGCGGuCGUUCGUUuaa----GCGC- -5'
21187 5' -50.4 NC_004778.3 + 30180 0.68 0.970349
Target:  5'- -aGaCGACGCgCaagagAGCAAGCGAG-UCGCGa -3'
miRNA:   3'- gaC-GUUGCG-G-----UCGUUCGUUUaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 30724 0.69 0.942756
Target:  5'- gCUGCGGCcgcgGCCGGCu-GCcaucgaAAGUUCGCGu -3'
miRNA:   3'- -GACGUUG----CGGUCGuuCG------UUUAAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.