miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21187 5' -50.4 NC_004778.3 + 111811 0.68 0.96371
Target:  5'- -gGCcGCGCCGGUAacaagGGCGAGggCGCc -3'
miRNA:   3'- gaCGuUGCGGUCGU-----UCGUUUaaGCGc -5'
21187 5' -50.4 NC_004778.3 + 93128 0.69 0.93778
Target:  5'- -cGCcGCGCUGGCGAucacGCAGuugUCGCGa -3'
miRNA:   3'- gaCGuUGCGGUCGUU----CGUUua-AGCGC- -5'
21187 5' -50.4 NC_004778.3 + 16296 0.69 0.93778
Target:  5'- uUGUAAacgUGCCGGCAGGCGucggCGUGa -3'
miRNA:   3'- gACGUU---GCGGUCGUUCGUuuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 90543 0.69 0.947465
Target:  5'- gCUGCAGCGUCGGauaguGGCAGcgcUCGCc -3'
miRNA:   3'- -GACGUUGCGGUCgu---UCGUUua-AGCGc -5'
21187 5' -50.4 NC_004778.3 + 94834 0.69 0.947465
Target:  5'- aCUGCAACguGCCGGUggGUug---CGCGc -3'
miRNA:   3'- -GACGUUG--CGGUCGuuCGuuuaaGCGC- -5'
21187 5' -50.4 NC_004778.3 + 1692 0.69 0.951911
Target:  5'- -aGCAGCGCgAGCAGGCGcAUgcccgacaUGCGu -3'
miRNA:   3'- gaCGUUGCGgUCGUUCGUuUAa-------GCGC- -5'
21187 5' -50.4 NC_004778.3 + 6253 0.69 0.951911
Target:  5'- uUGCAGCGCgGGCAaauuGGCAAcgaccUCGUa -3'
miRNA:   3'- gACGUUGCGgUCGU----UCGUUua---AGCGc -5'
21187 5' -50.4 NC_004778.3 + 113907 0.69 0.951911
Target:  5'- -gGCGGCGCC-GCGGGUuccucgcUCGCGg -3'
miRNA:   3'- gaCGUUGCGGuCGUUCGuuua---AGCGC- -5'
21187 5' -50.4 NC_004778.3 + 25147 0.68 0.956097
Target:  5'- uUGCGGCGCguGCAAaccuGCAcGUUCuuGCGg -3'
miRNA:   3'- gACGUUGCGguCGUU----CGUuUAAG--CGC- -5'
21187 5' -50.4 NC_004778.3 + 62415 0.69 0.932536
Target:  5'- uUGCGcguACGCCGGC-AGCGAAUUaaGCa -3'
miRNA:   3'- gACGU---UGCGGUCGuUCGUUUAAg-CGc -5'
21187 5' -50.4 NC_004778.3 + 124307 0.69 0.931997
Target:  5'- -cGCGGCGCCGGCGugggcacGGCGucUUCcgGCGa -3'
miRNA:   3'- gaCGUUGCGGUCGU-------UCGUuuAAG--CGC- -5'
21187 5' -50.4 NC_004778.3 + 128588 0.71 0.873329
Target:  5'- gCUGCAGCGCCaacuuugucGGCGGGCAuaccucCGCc -3'
miRNA:   3'- -GACGUUGCGG---------UCGUUCGUuuaa--GCGc -5'
21187 5' -50.4 NC_004778.3 + 28715 0.75 0.670567
Target:  5'- gCUGCAGCGCU-GCAAGCGAuugaacaCGCGu -3'
miRNA:   3'- -GACGUUGCGGuCGUUCGUUuaa----GCGC- -5'
21187 5' -50.4 NC_004778.3 + 26530 0.75 0.71344
Target:  5'- -gGCAaguuggGCGCCGGCAAGUAu-UUCGCu -3'
miRNA:   3'- gaCGU------UGCGGUCGUUCGUuuAAGCGc -5'
21187 5' -50.4 NC_004778.3 + 99023 0.74 0.73445
Target:  5'- -cGCAACGcCCGGCAAcGCG---UCGCGg -3'
miRNA:   3'- gaCGUUGC-GGUCGUU-CGUuuaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 40019 0.73 0.794718
Target:  5'- -gGC-ACGUCGGCGAGCGAgcacugcaaAUUCGUGg -3'
miRNA:   3'- gaCGuUGCGGUCGUUCGUU---------UAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 64876 0.73 0.804244
Target:  5'- uUGaauAUGCCAGCGGGCAAAUgaucUGCGa -3'
miRNA:   3'- gACgu-UGCGGUCGUUCGUUUAa---GCGC- -5'
21187 5' -50.4 NC_004778.3 + 36063 0.72 0.849043
Target:  5'- gCUGCuACGCgGGCAuucguugcGGCAGA-UCGCGc -3'
miRNA:   3'- -GACGuUGCGgUCGU--------UCGUUUaAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 17191 0.71 0.863064
Target:  5'- aCUGCAcggACGCCaaaaucuacgagacGGCGGugcGCGAGUUCGUGg -3'
miRNA:   3'- -GACGU---UGCGG--------------UCGUU---CGUUUAAGCGC- -5'
21187 5' -50.4 NC_004778.3 + 128507 0.71 0.873329
Target:  5'- gCUGCAGCGCCaacuuugucGGCGGGCAuaccucCGCc -3'
miRNA:   3'- -GACGUUGCGG---------UCGUUCGUuuaa--GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.