miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 34712 0.67 0.872413
Target:  5'- aGCAGCCagaCGCCCGugcugggAUUGCAgGa -3'
miRNA:   3'- -CGUCGGgcgGCGGGUuua----UAACGUgC- -5'
21188 5' -54.3 NC_004778.3 + 46836 0.67 0.87761
Target:  5'- gGCGGCUCGCCGCCuCAuccaacacuaCACGc -3'
miRNA:   3'- -CGUCGGGCGGCGG-GUuuauaac---GUGC- -5'
21188 5' -54.3 NC_004778.3 + 64130 0.67 0.900562
Target:  5'- aGCAGgUCGuuGCCCGAuucUGUgcaaacguugGCGCGg -3'
miRNA:   3'- -CGUCgGGCggCGGGUUu--AUAa---------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 5372 0.66 0.924804
Target:  5'- uCAGCgCGCCGUgCAuc---UGCACGa -3'
miRNA:   3'- cGUCGgGCGGCGgGUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 72457 0.69 0.796508
Target:  5'- -uGGCCCGCCGCaCAGGUccaGCGCc -3'
miRNA:   3'- cgUCGGGCGGCGgGUUUAuaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 72537 0.68 0.843972
Target:  5'- aGCAGCgcggacgacgcuCCGuuGCCCGAucaaaaagacgUGCGCGa -3'
miRNA:   3'- -CGUCG------------GGCggCGGGUUuaua-------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 103796 0.67 0.879803
Target:  5'- cCGGCCC-CCGCgCAAGc-UUGCACa -3'
miRNA:   3'- cGUCGGGcGGCGgGUUUauAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 30732 0.66 0.924804
Target:  5'- cGCGGCCgGCUGCCauCGAAaGUU-CGCGu -3'
miRNA:   3'- -CGUCGGgCGGCGG--GUUUaUAAcGUGC- -5'
21188 5' -54.3 NC_004778.3 + 3480 0.68 0.844799
Target:  5'- uGCAGCuCCGCCGCCUuuuccuccugaaCGCGg -3'
miRNA:   3'- -CGUCG-GGCGGCGGGuuuauaac----GUGC- -5'
21188 5' -54.3 NC_004778.3 + 40242 0.66 0.924804
Target:  5'- aUAGCCaGgCGCCCAAAaagacggGCGCGg -3'
miRNA:   3'- cGUCGGgCgGCGGGUUUauaa---CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 96367 0.67 0.879803
Target:  5'- aGCGGgCCGCUGCaCC----GUUGCGCc -3'
miRNA:   3'- -CGUCgGGCGGCG-GGuuuaUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 125055 0.68 0.856956
Target:  5'- cCAGgaCCGCUGCCCGAcgAU-GCugGu -3'
miRNA:   3'- cGUCg-GGCGGCGGGUUuaUAaCGugC- -5'
21188 5' -54.3 NC_004778.3 + 107952 0.67 0.879803
Target:  5'- gGCGGCgCCaucCgGCCCGAuuuUGUUGUACGc -3'
miRNA:   3'- -CGUCG-GGc--GgCGGGUUu--AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 63364 0.67 0.900562
Target:  5'- gGCAGCCUauguuGuuGCCCGuGUAUgcGUACGc -3'
miRNA:   3'- -CGUCGGG-----CggCGGGUuUAUAa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 92890 0.67 0.906996
Target:  5'- cGC-GCgCGCCGguUCCAAAUGcgGCGCGu -3'
miRNA:   3'- -CGuCGgGCGGC--GGGUUUAUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 5257 0.66 0.924804
Target:  5'- uGCGGUuuGUucacaacaaCGCCCAGuacaccgUGCACGg -3'
miRNA:   3'- -CGUCGggCG---------GCGGGUUuaua---ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 33665 0.71 0.696708
Target:  5'- cGCGGCCggcgcgcUGCCGCgCGGAUAgcgcccgGCGCGg -3'
miRNA:   3'- -CGUCGG-------GCGGCGgGUUUAUaa-----CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 15192 0.69 0.777696
Target:  5'- cCAGCCUuguGCCGCCCGAAUAcgguuucagguUUGacaACGu -3'
miRNA:   3'- cGUCGGG---CGGCGGGUUUAU-----------AACg--UGC- -5'
21188 5' -54.3 NC_004778.3 + 21667 0.69 0.805685
Target:  5'- cGCAacGCgaCGCCGCCCGAcgA--GCGCGa -3'
miRNA:   3'- -CGU--CGg-GCGGCGGGUUuaUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 28332 0.68 0.840643
Target:  5'- -aAGUgCCGCUGCCCAAucucucgcaucUGUUGUACGg -3'
miRNA:   3'- cgUCG-GGCGGCGGGUUu----------AUAACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.