miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 76385 0.72 0.8242
Target:  5'- uGCGgCGGCGGUUGCUgcggCGgCGGUUGCu -3'
miRNA:   3'- -CGCaGCCGUUAGUGGa---GCgGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 76355 0.72 0.8242
Target:  5'- uGCGgCGGCGGUUGCUgcggCGgCGGUUGCu -3'
miRNA:   3'- -CGCaGCCGUUAGUGGa---GCgGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 64157 0.72 0.8242
Target:  5'- aCGUUGGCGcggugggcguccAUCACgUCGUaCAAUUGCg -3'
miRNA:   3'- cGCAGCCGU------------UAGUGgAGCG-GUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 67497 0.72 0.8242
Target:  5'- aGUGUCGGaGAUCAag-CGCCAAcUGCa -3'
miRNA:   3'- -CGCAGCCgUUAGUggaGCGGUUaACG- -5'
21189 3' -51.3 NC_004778.3 + 97913 0.72 0.84149
Target:  5'- gGCccugUGGCAcuuAUCGCCg-GCCAGUUGCg -3'
miRNA:   3'- -CGca--GCCGU---UAGUGGagCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 29334 0.71 0.865864
Target:  5'- gGCG-CGGCGcgCGCUggggugCGCCAAgcgGCu -3'
miRNA:   3'- -CGCaGCCGUuaGUGGa-----GCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 64850 0.71 0.880989
Target:  5'- cCGUCGGCg--CACUgCGCCAcacaugcucaccGUUGCg -3'
miRNA:   3'- cGCAGCCGuuaGUGGaGCGGU------------UAACG- -5'
21189 3' -51.3 NC_004778.3 + 122461 0.71 0.880989
Target:  5'- uGCGUCGGCGccgACCUUGCUuuUUGa -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuAACg -5'
21189 3' -51.3 NC_004778.3 + 95972 0.7 0.888195
Target:  5'- uCGUCGGCGAgCACgC-CGCCG--UGCg -3'
miRNA:   3'- cGCAGCCGUUaGUG-GaGCGGUuaACG- -5'
21189 3' -51.3 NC_004778.3 + 36692 0.7 0.888195
Target:  5'- cCGUgGGCAAcacCGCgCUCGCCAAgacGCg -3'
miRNA:   3'- cGCAgCCGUUa--GUG-GAGCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 94451 0.7 0.893785
Target:  5'- cUGUCGGCcAUCGCCgacuaggguggcCGCCAucgaaauccgaGUUGCa -3'
miRNA:   3'- cGCAGCCGuUAGUGGa-----------GCGGU-----------UAACG- -5'
21189 3' -51.3 NC_004778.3 + 49503 0.7 0.895158
Target:  5'- aGCGUugCGGCA--CGCCUCGUCGggaauGUUGUc -3'
miRNA:   3'- -CGCA--GCCGUuaGUGGAGCGGU-----UAACG- -5'
21189 3' -51.3 NC_004778.3 + 93476 0.7 0.895158
Target:  5'- cCGUCGGCAggUACaggCUCaGCCAGUaGCg -3'
miRNA:   3'- cGCAGCCGUuaGUG---GAG-CGGUUAaCG- -5'
21189 3' -51.3 NC_004778.3 + 95260 0.7 0.895158
Target:  5'- uGCGccgCGGCGAccgCACCgUCGCUAAcgcgUGCu -3'
miRNA:   3'- -CGCa--GCCGUUa--GUGG-AGCGGUUa---ACG- -5'
21189 3' -51.3 NC_004778.3 + 119192 0.7 0.901872
Target:  5'- cGCGcaaUCGGCGcgcugcgcacuaAaCACCUgcucgcCGCCAAUUGCg -3'
miRNA:   3'- -CGC---AGCCGU------------UaGUGGA------GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 80501 0.7 0.901872
Target:  5'- cCGUgGGCGAggGCUUCuaCAAUUGCg -3'
miRNA:   3'- cGCAgCCGUUagUGGAGcgGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 66816 0.7 0.901872
Target:  5'- uGCGUCGGCGccgACCUCGCUuuUUa- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuAAcg -5'
21189 3' -51.3 NC_004778.3 + 38608 0.7 0.908335
Target:  5'- cGUGUCGGCaAAUCugCUCagugcccgGCCGAgcugGUa -3'
miRNA:   3'- -CGCAGCCG-UUAGugGAG--------CGGUUaa--CG- -5'
21189 3' -51.3 NC_004778.3 + 18926 0.7 0.908335
Target:  5'- uUGUCGGCAAUUuucuguuuuACCUgGCCGAcaguaUGCc -3'
miRNA:   3'- cGCAGCCGUUAG---------UGGAgCGGUUa----ACG- -5'
21189 3' -51.3 NC_004778.3 + 37986 0.7 0.910848
Target:  5'- cGCGUCaGCAGUCAugcacacgucaacguCCUUGCUuaaagUGCa -3'
miRNA:   3'- -CGCAGcCGUUAGU---------------GGAGCGGuua--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.