miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 26539 0.69 0.931622
Target:  5'- gGCGcCGGCAAgUAUUUCGCUAGcguggUGCg -3'
miRNA:   3'- -CGCaGCCGUUaGUGGAGCGGUUa----ACG- -5'
21189 3' -51.3 NC_004778.3 + 29334 0.71 0.865864
Target:  5'- gGCG-CGGCGcgCGCUggggugCGCCAAgcgGCu -3'
miRNA:   3'- -CGCaGCCGUuaGUGGa-----GCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 30078 0.75 0.696867
Target:  5'- uGCGUCGGCGccgACCUCGCUuuucggGCa -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuaa--CG- -5'
21189 3' -51.3 NC_004778.3 + 31246 0.66 0.982081
Target:  5'- cCGUgGcGCGcgCACCUCgcGCCGAgaaacUUGCg -3'
miRNA:   3'- cGCAgC-CGUuaGUGGAG--CGGUU-----AACG- -5'
21189 3' -51.3 NC_004778.3 + 34455 0.66 0.989059
Target:  5'- cGCG-CGGaaaGAaCGCCUCGUCGAacaGCg -3'
miRNA:   3'- -CGCaGCCg--UUaGUGGAGCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 34938 0.66 0.984076
Target:  5'- cGCGgCGGCGucGUUAUUgUGCCAacGUUGCa -3'
miRNA:   3'- -CGCaGCCGU--UAGUGGaGCGGU--UAACG- -5'
21189 3' -51.3 NC_004778.3 + 36692 0.7 0.888195
Target:  5'- cCGUgGGCAAcacCGCgCUCGCCAAgacGCg -3'
miRNA:   3'- cGCAgCCGUUa--GUG-GAGCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 37700 0.79 0.478071
Target:  5'- cGCuGUCGGCGAUCACCaucUUGCCGAa-GCa -3'
miRNA:   3'- -CG-CAGCCGUUAGUGG---AGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 37986 0.7 0.910848
Target:  5'- cGCGUCaGCAGUCAugcacacgucaacguCCUUGCUuaaagUGCa -3'
miRNA:   3'- -CGCAGcCGUUAGU---------------GGAGCGGuua--ACG- -5'
21189 3' -51.3 NC_004778.3 + 38608 0.7 0.908335
Target:  5'- cGUGUCGGCaAAUCugCUCagugcccgGCCGAgcugGUa -3'
miRNA:   3'- -CGCAGCCG-UUAGugGAG--------CGGUUaa--CG- -5'
21189 3' -51.3 NC_004778.3 + 40761 0.73 0.777835
Target:  5'- uGCG-CGGCGA-CAUCcCGuCCAAUUGCg -3'
miRNA:   3'- -CGCaGCCGUUaGUGGaGC-GGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 43847 0.67 0.977536
Target:  5'- gGCGUCaGCGGUCGCacguggcgUCGCCGuuuucuUUGUc -3'
miRNA:   3'- -CGCAGcCGUUAGUGg-------AGCGGUu-----AACG- -5'
21189 3' -51.3 NC_004778.3 + 44854 0.68 0.950794
Target:  5'- cGCGUCauuauGUCACC-CGCCAGUuugGCg -3'
miRNA:   3'- -CGCAGccgu-UAGUGGaGCGGUUAa--CG- -5'
21189 3' -51.3 NC_004778.3 + 49503 0.7 0.895158
Target:  5'- aGCGUugCGGCA--CGCCUCGUCGggaauGUUGUc -3'
miRNA:   3'- -CGCA--GCCGUuaGUGGAGCGGU-----UAACG- -5'
21189 3' -51.3 NC_004778.3 + 56925 0.66 0.989059
Target:  5'- uCGUCGGCGucCGCgUCGUCGAc-GCu -3'
miRNA:   3'- cGCAGCCGUuaGUGgAGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 58237 0.67 0.969204
Target:  5'- --cUCGGCGA-CAcCCUCGCCAAcgccuucgGCg -3'
miRNA:   3'- cgcAGCCGUUaGU-GGAGCGGUUaa------CG- -5'
21189 3' -51.3 NC_004778.3 + 59705 0.67 0.972194
Target:  5'- uGCGUUGGCugagCGCa--GCCAG-UGCa -3'
miRNA:   3'- -CGCAGCCGuua-GUGgagCGGUUaACG- -5'
21189 3' -51.3 NC_004778.3 + 61371 0.74 0.738149
Target:  5'- gGCGcCGGCGcgucGUCGCUgagCGCCAGUUugaGCg -3'
miRNA:   3'- -CGCaGCCGU----UAGUGGa--GCGGUUAA---CG- -5'
21189 3' -51.3 NC_004778.3 + 61801 0.67 0.972194
Target:  5'- cGCGUCGa-AGUcCACCUCGUaCAcgUGCc -3'
miRNA:   3'- -CGCAGCcgUUA-GUGGAGCG-GUuaACG- -5'
21189 3' -51.3 NC_004778.3 + 61883 0.67 0.972194
Target:  5'- uGUGUUGGCGGcacagauaaagCGCCUCGUUAAacUGCg -3'
miRNA:   3'- -CGCAGCCGUUa----------GUGGAGCGGUUa-ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.