miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 5871 0.68 0.962193
Target:  5'- aCGUUGGCu-UCuuCCUCGUCAAUgaaaccgUGCg -3'
miRNA:   3'- cGCAGCCGuuAGu-GGAGCGGUUA-------ACG- -5'
21189 3' -51.3 NC_004778.3 + 5945 0.72 0.814364
Target:  5'- cGCGUUGGCu-UCuuCCUCGCUGAUgugaccgUGCg -3'
miRNA:   3'- -CGCAGCCGuuAGu-GGAGCGGUUA-------ACG- -5'
21189 3' -51.3 NC_004778.3 + 7897 0.68 0.965991
Target:  5'- gGCGUgGGCGugUugCUgGCCGGcgGCg -3'
miRNA:   3'- -CGCAgCCGUuaGugGAgCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 8480 0.66 0.985898
Target:  5'- aGCGggcgCGGCccgCGCCcCGCCAGUc-- -3'
miRNA:   3'- -CGCa---GCCGuuaGUGGaGCGGUUAacg -5'
21189 3' -51.3 NC_004778.3 + 10232 0.66 0.985898
Target:  5'- gGCGgCGaGCAGguguuuagugCGCagcgCGCCGAUUGCg -3'
miRNA:   3'- -CGCaGC-CGUUa---------GUGga--GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 10493 0.73 0.787429
Target:  5'- gGCGUCGGUgugCGCCaaCGCCGAauuUUGCc -3'
miRNA:   3'- -CGCAGCCGuuaGUGGa-GCGGUU---AACG- -5'
21189 3' -51.3 NC_004778.3 + 13209 0.68 0.965991
Target:  5'- gGCGUUGGCGucgugCACCUCGUa------ -3'
miRNA:   3'- -CGCAGCCGUua---GUGGAGCGguuaacg -5'
21189 3' -51.3 NC_004778.3 + 13271 0.66 0.989059
Target:  5'- -gGUC-GUAAUC-CCUCGCCAGc-GCa -3'
miRNA:   3'- cgCAGcCGUUAGuGGAGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 14056 0.67 0.977536
Target:  5'- aGCGUCGGUGGaCGCCUCu----UUGCa -3'
miRNA:   3'- -CGCAGCCGUUaGUGGAGcgguuAACG- -5'
21189 3' -51.3 NC_004778.3 + 14491 0.66 0.989059
Target:  5'- aGCGUCaaucauGGCAAagGCCgcggugcgcaCGCCGGcUUGCg -3'
miRNA:   3'- -CGCAG------CCGUUagUGGa---------GCGGUU-AACG- -5'
21189 3' -51.3 NC_004778.3 + 16068 0.66 0.982081
Target:  5'- uGUGUcCGGCAAgcccgCGCgUCGCCAc---- -3'
miRNA:   3'- -CGCA-GCCGUUa----GUGgAGCGGUuaacg -5'
21189 3' -51.3 NC_004778.3 + 18926 0.7 0.908335
Target:  5'- uUGUCGGCAAUUuucuguuuuACCUgGCCGAcaguaUGCc -3'
miRNA:   3'- cGCAGCCGUUAG---------UGGAgCGGUUa----ACG- -5'
21189 3' -51.3 NC_004778.3 + 19194 0.67 0.977536
Target:  5'- aGUGUCGcGCGggCACCUUGgUGAcgUGCu -3'
miRNA:   3'- -CGCAGC-CGUuaGUGGAGCgGUUa-ACG- -5'
21189 3' -51.3 NC_004778.3 + 19878 0.75 0.654644
Target:  5'- uGCGUCGGCGccgACCUCGCag--UGCu -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGguuaACG- -5'
21189 3' -51.3 NC_004778.3 + 19912 0.69 0.931622
Target:  5'- uGCGUCGGCGccgACCUCGCUu----- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 20033 0.69 0.931622
Target:  5'- uGCGUCGGCGccgACCUCGCUu----- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 21793 0.73 0.768099
Target:  5'- gGCGUCGGaaCGAUCACUUuuuucucaCGCCAuuugucuaGUUGCg -3'
miRNA:   3'- -CGCAGCC--GUUAGUGGA--------GCGGU--------UAACG- -5'
21189 3' -51.3 NC_004778.3 + 22345 0.75 0.690578
Target:  5'- -aGUCGGCAauguguauagugauaGUCGCUUCGCCcGUgGCg -3'
miRNA:   3'- cgCAGCCGU---------------UAGUGGAGCGGuUAaCG- -5'
21189 3' -51.3 NC_004778.3 + 22427 0.66 0.984076
Target:  5'- cGCGUCGGCAucaaacaaGCCUUggaauaugacgGCCGGUcUGUc -3'
miRNA:   3'- -CGCAGCCGUuag-----UGGAG-----------CGGUUA-ACG- -5'
21189 3' -51.3 NC_004778.3 + 24911 0.69 0.941718
Target:  5'- cGCGUguuguugccaCGGCucGUCAUCUUGCuccCAGUUGCc -3'
miRNA:   3'- -CGCA----------GCCGu-UAGUGGAGCG---GUUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.