miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 128603 0.66 0.987397
Target:  5'- uUGUCGGCGGgcauaccucCGCCUCcgccuccgccuccGCCGccGUUGCu -3'
miRNA:   3'- cGCAGCCGUUa--------GUGGAG-------------CGGU--UAACG- -5'
21189 3' -51.3 NC_004778.3 + 128522 0.66 0.987397
Target:  5'- uUGUCGGCGGgcauaccucCGCCUCcgccuccgccuccGCCGccGUUGCu -3'
miRNA:   3'- cGCAGCCGUUa--------GUGGAG-------------CGGU--UAACG- -5'
21189 3' -51.3 NC_004778.3 + 128461 0.66 0.982081
Target:  5'- uGCGUCGuCGAgcaUGCCUCcGCC-GUUGCu -3'
miRNA:   3'- -CGCAGCcGUUa--GUGGAG-CGGuUAACG- -5'
21189 3' -51.3 NC_004778.3 + 123976 0.67 0.977536
Target:  5'- aCGUUGGCcAUgGCaggCGCgCAGUUGCc -3'
miRNA:   3'- cGCAGCCGuUAgUGga-GCG-GUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 122461 0.71 0.880989
Target:  5'- uGCGUCGGCGccgACCUUGCUuuUUGa -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuAACg -5'
21189 3' -51.3 NC_004778.3 + 121429 0.75 0.665253
Target:  5'- cGCGUCGGCcguGUCGCCgccgucggCGCCGc--GCa -3'
miRNA:   3'- -CGCAGCCGu--UAGUGGa-------GCGGUuaaCG- -5'
21189 3' -51.3 NC_004778.3 + 121159 0.69 0.946383
Target:  5'- gGCGUgGGCAG-CACCgcuagaauauUCGCgGuUUGCg -3'
miRNA:   3'- -CGCAgCCGUUaGUGG----------AGCGgUuAACG- -5'
21189 3' -51.3 NC_004778.3 + 119956 1.14 0.003359
Target:  5'- cGCGUCGGCAAUCACCUCGCCAAUUGCc -3'
miRNA:   3'- -CGCAGCCGUUAGUGGAGCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 119192 0.7 0.901872
Target:  5'- cGCGcaaUCGGCGcgcugcgcacuaAaCACCUgcucgcCGCCAAUUGCg -3'
miRNA:   3'- -CGC---AGCCGU------------UaGUGGA------GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 118951 0.74 0.707301
Target:  5'- gGCGUUGGCGcaCACCgaCGCCAGUUugaaGCa -3'
miRNA:   3'- -CGCAGCCGUuaGUGGa-GCGGUUAA----CG- -5'
21189 3' -51.3 NC_004778.3 + 117539 0.69 0.920494
Target:  5'- uGCaGUUGGCg--CGCUUgcaaCGCCGGUUGCa -3'
miRNA:   3'- -CG-CAGCCGuuaGUGGA----GCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 114948 0.67 0.969204
Target:  5'- uCGUCGccGCAAUCGCaCUCGCCc----- -3'
miRNA:   3'- cGCAGC--CGUUAGUG-GAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 112469 0.76 0.622739
Target:  5'- uGUG-CGGCAGUCGCUcgCGCCAGcgGCc -3'
miRNA:   3'- -CGCaGCCGUUAGUGGa-GCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 111983 0.82 0.312928
Target:  5'- aGCGUCGGCAGUaCGCCUCGUUAAa--- -3'
miRNA:   3'- -CGCAGCCGUUA-GUGGAGCGGUUaacg -5'
21189 3' -51.3 NC_004778.3 + 109997 0.69 0.928392
Target:  5'- gGUGUCGGUggUgACCacgguguuucggcgCGCCGAcgGCg -3'
miRNA:   3'- -CGCAGCCGuuAgUGGa-------------GCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 108326 0.67 0.979904
Target:  5'- aCGUCGGCGAUCugggcaacguccGCUcCGCgGGcUGCa -3'
miRNA:   3'- cGCAGCCGUUAG------------UGGaGCGgUUaACG- -5'
21189 3' -51.3 NC_004778.3 + 104768 0.69 0.91991
Target:  5'- aGCGUgCGGCAagugcgcGUCAUaUUGaCCAAUUGCc -3'
miRNA:   3'- -CGCA-GCCGU-------UAGUGgAGC-GGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 101378 0.68 0.958874
Target:  5'- aGCGaCGGC-AUCGCCUUuCCAAacUUGUu -3'
miRNA:   3'- -CGCaGCCGuUAGUGGAGcGGUU--AACG- -5'
21189 3' -51.3 NC_004778.3 + 100662 0.73 0.796873
Target:  5'- cGUGUCGGC-GUCGCgCUC-CCcGUUGCc -3'
miRNA:   3'- -CGCAGCCGuUAGUG-GAGcGGuUAACG- -5'
21189 3' -51.3 NC_004778.3 + 97913 0.72 0.84149
Target:  5'- gGCccugUGGCAcuuAUCGCCg-GCCAGUUGCg -3'
miRNA:   3'- -CGca--GCCGU---UAGUGGagCGGUUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.