Results 1 - 20 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 119956 | 1.14 | 0.003359 |
Target: 5'- cGCGUCGGCAAUCACCUCGCCAAUUGCc -3' miRNA: 3'- -CGCAGCCGUUAGUGGAGCGGUUAACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 111983 | 0.82 | 0.312928 |
Target: 5'- aGCGUCGGCAGUaCGCCUCGUUAAa--- -3' miRNA: 3'- -CGCAGCCGUUA-GUGGAGCGGUUaacg -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 37700 | 0.79 | 0.478071 |
Target: 5'- cGCuGUCGGCGAUCACCaucUUGCCGAa-GCa -3' miRNA: 3'- -CG-CAGCCGUUAGUGG---AGCGGUUaaCG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 112469 | 0.76 | 0.622739 |
Target: 5'- uGUG-CGGCAGUCGCUcgCGCCAGcgGCc -3' miRNA: 3'- -CGCaGCCGUUAGUGGa-GCGGUUaaCG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 19878 | 0.75 | 0.654644 |
Target: 5'- uGCGUCGGCGccgACCUCGCag--UGCu -3' miRNA: 3'- -CGCAGCCGUuagUGGAGCGguuaACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 121429 | 0.75 | 0.665253 |
Target: 5'- cGCGUCGGCcguGUCGCCgccgucggCGCCGc--GCa -3' miRNA: 3'- -CGCAGCCGu--UAGUGGa-------GCGGUuaaCG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 22345 | 0.75 | 0.690578 |
Target: 5'- -aGUCGGCAauguguauagugauaGUCGCUUCGCCcGUgGCg -3' miRNA: 3'- cgCAGCCGU---------------UAGUGGAGCGGuUAaCG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 30078 | 0.75 | 0.696867 |
Target: 5'- uGCGUCGGCGccgACCUCGCUuuucggGCa -3' miRNA: 3'- -CGCAGCCGUuagUGGAGCGGuuaa--CG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 67804 | 0.75 | 0.696867 |
Target: 5'- gGCGUUGGCGcgCGCUggcugcgcggCGCCAAacgcUUGCa -3' miRNA: 3'- -CGCAGCCGUuaGUGGa---------GCGGUU----AACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 71205 | 0.74 | 0.707301 |
Target: 5'- gGCGUUGGCGAggGugUCGCCGAggGCg -3' miRNA: 3'- -CGCAGCCGUUagUggAGCGGUUaaCG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 118951 | 0.74 | 0.707301 |
Target: 5'- gGCGUUGGCGcaCACCgaCGCCAGUUugaaGCa -3' miRNA: 3'- -CGCAGCCGUuaGUGGa-GCGGUUAA----CG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 61371 | 0.74 | 0.738149 |
Target: 5'- gGCGcCGGCGcgucGUCGCUgagCGCCAGUUugaGCg -3' miRNA: 3'- -CGCaGCCGU----UAGUGGa--GCGGUUAA---CG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 21793 | 0.73 | 0.768099 |
Target: 5'- gGCGUCGGaaCGAUCACUUuuuucucaCGCCAuuugucuaGUUGCg -3' miRNA: 3'- -CGCAGCC--GUUAGUGGA--------GCGGU--------UAACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 82099 | 0.73 | 0.776868 |
Target: 5'- aGCGgCGGC-AUCACCUCGUUGgcaccguuuaggcAUUGCa -3' miRNA: 3'- -CGCaGCCGuUAGUGGAGCGGU-------------UAACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 40761 | 0.73 | 0.777835 |
Target: 5'- uGCG-CGGCGA-CAUCcCGuCCAAUUGCg -3' miRNA: 3'- -CGCaGCCGUUaGUGGaGC-GGUUAACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 72239 | 0.73 | 0.777835 |
Target: 5'- cCGUCGGCAAgCACCaauUCGCacgcGUUGCc -3' miRNA: 3'- cGCAGCCGUUaGUGG---AGCGgu--UAACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 10493 | 0.73 | 0.787429 |
Target: 5'- gGCGUCGGUgugCGCCaaCGCCGAauuUUGCc -3' miRNA: 3'- -CGCAGCCGuuaGUGGa-GCGGUU---AACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 82467 | 0.73 | 0.796873 |
Target: 5'- cGCGUCGGCGugagCGCCggCGCUuucgcUGCu -3' miRNA: 3'- -CGCAGCCGUua--GUGGa-GCGGuua--ACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 100662 | 0.73 | 0.796873 |
Target: 5'- cGUGUCGGC-GUCGCgCUC-CCcGUUGCc -3' miRNA: 3'- -CGCAGCCGuUAGUG-GAGcGGuUAACG- -5' |
|||||||
21189 | 3' | -51.3 | NC_004778.3 | + | 5945 | 0.72 | 0.814364 |
Target: 5'- cGCGUUGGCu-UCuuCCUCGCUGAUgugaccgUGCg -3' miRNA: 3'- -CGCAGCCGuuAGu-GGAGCGGUUA-------ACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home