miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 37986 0.7 0.910848
Target:  5'- cGCGUCaGCAGUCAugcacacgucaacguCCUUGCUuaaagUGCa -3'
miRNA:   3'- -CGCAGcCGUUAGU---------------GGAGCGGuua--ACG- -5'
21189 3' -51.3 NC_004778.3 + 97913 0.72 0.84149
Target:  5'- gGCccugUGGCAcuuAUCGCCg-GCCAGUUGCg -3'
miRNA:   3'- -CGca--GCCGU---UAGUGGagCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 29334 0.71 0.865864
Target:  5'- gGCG-CGGCGcgCGCUggggugCGCCAAgcgGCu -3'
miRNA:   3'- -CGCaGCCGUuaGUGGa-----GCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 122461 0.71 0.880989
Target:  5'- uGCGUCGGCGccgACCUUGCUuuUUGa -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuAACg -5'
21189 3' -51.3 NC_004778.3 + 36692 0.7 0.888195
Target:  5'- cCGUgGGCAAcacCGCgCUCGCCAAgacGCg -3'
miRNA:   3'- cGCAgCCGUUa--GUG-GAGCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 49503 0.7 0.895158
Target:  5'- aGCGUugCGGCA--CGCCUCGUCGggaauGUUGUc -3'
miRNA:   3'- -CGCA--GCCGUuaGUGGAGCGGU-----UAACG- -5'
21189 3' -51.3 NC_004778.3 + 95260 0.7 0.895158
Target:  5'- uGCGccgCGGCGAccgCACCgUCGCUAAcgcgUGCu -3'
miRNA:   3'- -CGCa--GCCGUUa--GUGG-AGCGGUUa---ACG- -5'
21189 3' -51.3 NC_004778.3 + 66816 0.7 0.901872
Target:  5'- uGCGUCGGCGccgACCUCGCUuuUUa- -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGGuuAAcg -5'
21189 3' -51.3 NC_004778.3 + 18926 0.7 0.908335
Target:  5'- uUGUCGGCAAUUuucuguuuuACCUgGCCGAcaguaUGCc -3'
miRNA:   3'- cGCAGCCGUUAG---------UGGAgCGGUUa----ACG- -5'
21189 3' -51.3 NC_004778.3 + 67497 0.72 0.8242
Target:  5'- aGUGUCGGaGAUCAag-CGCCAAcUGCa -3'
miRNA:   3'- -CGCAGCCgUUAGUggaGCGGUUaACG- -5'
21189 3' -51.3 NC_004778.3 + 5945 0.72 0.814364
Target:  5'- cGCGUUGGCu-UCuuCCUCGCUGAUgugaccgUGCg -3'
miRNA:   3'- -CGCAGCCGuuAGu-GGAGCGGUUA-------ACG- -5'
21189 3' -51.3 NC_004778.3 + 100662 0.73 0.796873
Target:  5'- cGUGUCGGC-GUCGCgCUC-CCcGUUGCc -3'
miRNA:   3'- -CGCAGCCGuUAGUG-GAGcGGuUAACG- -5'
21189 3' -51.3 NC_004778.3 + 37700 0.79 0.478071
Target:  5'- cGCuGUCGGCGAUCACCaucUUGCCGAa-GCa -3'
miRNA:   3'- -CG-CAGCCGUUAGUGG---AGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 112469 0.76 0.622739
Target:  5'- uGUG-CGGCAGUCGCUcgCGCCAGcgGCc -3'
miRNA:   3'- -CGCaGCCGUUAGUGGa-GCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 19878 0.75 0.654644
Target:  5'- uGCGUCGGCGccgACCUCGCag--UGCu -3'
miRNA:   3'- -CGCAGCCGUuagUGGAGCGguuaACG- -5'
21189 3' -51.3 NC_004778.3 + 121429 0.75 0.665253
Target:  5'- cGCGUCGGCcguGUCGCCgccgucggCGCCGc--GCa -3'
miRNA:   3'- -CGCAGCCGu--UAGUGGa-------GCGGUuaaCG- -5'
21189 3' -51.3 NC_004778.3 + 22345 0.75 0.690578
Target:  5'- -aGUCGGCAauguguauagugauaGUCGCUUCGCCcGUgGCg -3'
miRNA:   3'- cgCAGCCGU---------------UAGUGGAGCGGuUAaCG- -5'
21189 3' -51.3 NC_004778.3 + 71205 0.74 0.707301
Target:  5'- gGCGUUGGCGAggGugUCGCCGAggGCg -3'
miRNA:   3'- -CGCAGCCGUUagUggAGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 61371 0.74 0.738149
Target:  5'- gGCGcCGGCGcgucGUCGCUgagCGCCAGUUugaGCg -3'
miRNA:   3'- -CGCaGCCGU----UAGUGGa--GCGGUUAA---CG- -5'
21189 3' -51.3 NC_004778.3 + 10493 0.73 0.787429
Target:  5'- gGCGUCGGUgugCGCCaaCGCCGAauuUUGCc -3'
miRNA:   3'- -CGCAGCCGuuaGUGGa-GCGGUU---AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.