miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 3' -51.3 NC_004778.3 + 56925 0.66 0.989059
Target:  5'- uCGUCGGCGucCGCgUCGUCGAc-GCu -3'
miRNA:   3'- cGCAGCCGUuaGUGgAGCGGUUaaCG- -5'
21189 3' -51.3 NC_004778.3 + 64285 0.67 0.972194
Target:  5'- gGUGUCcgGGUcAUCGCC-CGCCAuuaguuUUGCc -3'
miRNA:   3'- -CGCAG--CCGuUAGUGGaGCGGUu-----AACG- -5'
21189 3' -51.3 NC_004778.3 + 58237 0.67 0.969204
Target:  5'- --cUCGGCGA-CAcCCUCGCCAAcgccuucgGCg -3'
miRNA:   3'- cgcAGCCGUUaGU-GGAGCGGUUaa------CG- -5'
21189 3' -51.3 NC_004778.3 + 119956 1.14 0.003359
Target:  5'- cGCGUCGGCAAUCACCUCGCCAAUUGCc -3'
miRNA:   3'- -CGCAGCCGUUAGUGGAGCGGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 72923 0.66 0.984076
Target:  5'- aCGUUGGCGAUUAaCUCacGCCAAgcuaGCg -3'
miRNA:   3'- cGCAGCCGUUAGUgGAG--CGGUUaa--CG- -5'
21189 3' -51.3 NC_004778.3 + 8480 0.66 0.985898
Target:  5'- aGCGggcgCGGCccgCGCCcCGCCAGUc-- -3'
miRNA:   3'- -CGCa---GCCGuuaGUGGaGCGGUUAacg -5'
21189 3' -51.3 NC_004778.3 + 90495 0.66 0.982081
Target:  5'- uGCG-CGGCGGcgACCaCGCCGAUccGCa -3'
miRNA:   3'- -CGCaGCCGUUagUGGaGCGGUUAa-CG- -5'
21189 3' -51.3 NC_004778.3 + 108326 0.67 0.979904
Target:  5'- aCGUCGGCGAUCugggcaacguccGCUcCGCgGGcUGCa -3'
miRNA:   3'- cGCAGCCGUUAG------------UGGaGCGgUUaACG- -5'
21189 3' -51.3 NC_004778.3 + 14056 0.67 0.977536
Target:  5'- aGCGUCGGUGGaCGCCUCu----UUGCa -3'
miRNA:   3'- -CGCAGCCGUUaGUGGAGcgguuAACG- -5'
21189 3' -51.3 NC_004778.3 + 59705 0.67 0.972194
Target:  5'- uGCGUUGGCugagCGCa--GCCAG-UGCa -3'
miRNA:   3'- -CGCAGCCGuua-GUGgagCGGUUaACG- -5'
21189 3' -51.3 NC_004778.3 + 72436 0.67 0.974969
Target:  5'- aGUGUaggCGGCAAacUCGCCUgGCCcgccGCa -3'
miRNA:   3'- -CGCA---GCCGUU--AGUGGAgCGGuuaaCG- -5'
21189 3' -51.3 NC_004778.3 + 43847 0.67 0.977536
Target:  5'- gGCGUCaGCGGUCGCacguggcgUCGCCGuuuucuUUGUc -3'
miRNA:   3'- -CGCAGcCGUUAGUGg-------AGCGGUu-----AACG- -5'
21189 3' -51.3 NC_004778.3 + 34455 0.66 0.989059
Target:  5'- cGCG-CGGaaaGAaCGCCUCGUCGAacaGCg -3'
miRNA:   3'- -CGCaGCCg--UUaGUGGAGCGGUUaa-CG- -5'
21189 3' -51.3 NC_004778.3 + 61883 0.67 0.972194
Target:  5'- uGUGUUGGCGGcacagauaaagCGCCUCGUUAAacUGCg -3'
miRNA:   3'- -CGCAGCCGUUa----------GUGGAGCGGUUa-ACG- -5'
21189 3' -51.3 NC_004778.3 + 71970 0.66 0.989059
Target:  5'- cGCG-CGGCAGcggCAgCUUGCCcag-GCa -3'
miRNA:   3'- -CGCaGCCGUUa--GUgGAGCGGuuaaCG- -5'
21189 3' -51.3 NC_004778.3 + 76309 0.67 0.977536
Target:  5'- cGCcggCGGCGGUUGCUguggCGgCGGUUGCu -3'
miRNA:   3'- -CGca-GCCGUUAGUGGa---GCgGUUAACG- -5'
21189 3' -51.3 NC_004778.3 + 61801 0.67 0.972194
Target:  5'- cGCGUCGa-AGUcCACCUCGUaCAcgUGCc -3'
miRNA:   3'- -CGCAGCcgUUA-GUGGAGCG-GUuaACG- -5'
21189 3' -51.3 NC_004778.3 + 114948 0.67 0.969204
Target:  5'- uCGUCGccGCAAUCGCaCUCGCCc----- -3'
miRNA:   3'- cGCAGC--CGUUAGUG-GAGCGGuuaacg -5'
21189 3' -51.3 NC_004778.3 + 14491 0.66 0.989059
Target:  5'- aGCGUCaaucauGGCAAagGCCgcggugcgcaCGCCGGcUUGCg -3'
miRNA:   3'- -CGCAG------CCGUUagUGGa---------GCGGUU-AACG- -5'
21189 3' -51.3 NC_004778.3 + 80809 0.66 0.982081
Target:  5'- cGCGgcaaCGGcCGGUCGCgUCGCUAugGUcGCa -3'
miRNA:   3'- -CGCa---GCC-GUUAGUGgAGCGGU--UAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.