miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 5' -61.9 NC_004778.3 + 8466 0.66 0.646487
Target:  5'- -gGCGgCGCCGGGGCaGCGGgCGcGg -3'
miRNA:   3'- gaCGCgGCGGCUCUGcUGCCgGCaCa -5'
21189 5' -61.9 NC_004778.3 + 109123 0.66 0.636601
Target:  5'- uUGUGCCGCCGAuggugccguuaGAcCGuACGGCCa--- -3'
miRNA:   3'- gACGCGGCGGCU-----------CU-GC-UGCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 97001 0.66 0.626711
Target:  5'- gCUGCGCCGCaugcuGAUG-CaGCCGUGc -3'
miRNA:   3'- -GACGCGGCGgcu--CUGCuGcCGGCACa -5'
21189 5' -61.9 NC_004778.3 + 1640 0.66 0.616825
Target:  5'- gCUGCGCUGCgGAaaGCGACGcGUCGUu- -3'
miRNA:   3'- -GACGCGGCGgCUc-UGCUGC-CGGCAca -5'
21189 5' -61.9 NC_004778.3 + 33366 0.66 0.597092
Target:  5'- -gGCGaCGUCGcGGACGACGcGCCGUc- -3'
miRNA:   3'- gaCGCgGCGGC-UCUGCUGC-CGGCAca -5'
21189 5' -61.9 NC_004778.3 + 111387 0.67 0.591189
Target:  5'- gCUGCGaggugcucaCCagcauacguuugaggGCCGGGAUGAgGGCUGUGUu -3'
miRNA:   3'- -GACGC---------GG---------------CGGCUCUGCUgCCGGCACA- -5'
21189 5' -61.9 NC_004778.3 + 14566 0.67 0.587259
Target:  5'- gUGCGCCaGCauuGugGACGGCC-UGg -3'
miRNA:   3'- gACGCGG-CGgcuCugCUGCCGGcACa -5'
21189 5' -61.9 NC_004778.3 + 1520 0.67 0.577455
Target:  5'- -gGCGCUGCCGAGGu--CGGCCa--- -3'
miRNA:   3'- gaCGCGGCGGCUCUgcuGCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 17245 0.67 0.567689
Target:  5'- aUGCGCgagggCGCCGAGaACGAagugcaguCGGCCGa-- -3'
miRNA:   3'- gACGCG-----GCGGCUC-UGCU--------GCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 10706 0.67 0.557964
Target:  5'- gUGCGCCGCCGcGcCGA-GGCCa--- -3'
miRNA:   3'- gACGCGGCGGCuCuGCUgCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 81784 0.67 0.557964
Target:  5'- gUGCGCggccUGCCGGGGCGGCGuCUGUa- -3'
miRNA:   3'- gACGCG----GCGGCUCUGCUGCcGGCAca -5'
21189 5' -61.9 NC_004778.3 + 32055 0.67 0.548287
Target:  5'- -cGCGCCGCCacacGAUGGCGGUCa--- -3'
miRNA:   3'- gaCGCGGCGGcu--CUGCUGCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 100241 0.67 0.545394
Target:  5'- aCUGCcgcgugcgcgauugGCUGCCGAG-CGACGacCCGUGg -3'
miRNA:   3'- -GACG--------------CGGCGGCUCuGCUGCc-GGCACa -5'
21189 5' -61.9 NC_004778.3 + 121540 0.68 0.526242
Target:  5'- -aGCGCCGCCG-GccagcaacacgcccACGcCGGCCGUu- -3'
miRNA:   3'- gaCGCGGCGGCuC--------------UGCuGCCGGCAca -5'
21189 5' -61.9 NC_004778.3 + 5547 0.68 0.519597
Target:  5'- gCUGUGCCucuuCCGcaAGugGAuaUGGCCGUGUu -3'
miRNA:   3'- -GACGCGGc---GGC--UCugCU--GCCGGCACA- -5'
21189 5' -61.9 NC_004778.3 + 88161 0.68 0.510163
Target:  5'- -cGCGCuCGCCaAGAUGACGGacguCGUGc -3'
miRNA:   3'- gaCGCG-GCGGcUCUGCUGCCg---GCACa -5'
21189 5' -61.9 NC_004778.3 + 61295 0.68 0.500802
Target:  5'- aUGCGCCGUCGccGACGugcgagaguACGGCCGc-- -3'
miRNA:   3'- gACGCGGCGGCu-CUGC---------UGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 10639 0.68 0.498008
Target:  5'- -gGCGCCGCUGGGccucguaauugugcGCGcCGGCCGc-- -3'
miRNA:   3'- gaCGCGGCGGCUC--------------UGCuGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 114362 0.68 0.491517
Target:  5'- cCUGCG-CGCCGcGGGCGA-GGCCGg-- -3'
miRNA:   3'- -GACGCgGCGGC-UCUGCUgCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 49434 0.68 0.491517
Target:  5'- uUGCGCCGCCGAcGcagccucuuGCGAgGGCaCGUu- -3'
miRNA:   3'- gACGCGGCGGCU-C---------UGCUgCCG-GCAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.