miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 109721 1.12 0.022284
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62847 1.12 0.022284
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62977 1.12 0.022284
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62587 1.06 0.048823
Target:  5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- aGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 109590 1.03 0.074041
Target:  5'- gUUUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6737 1.02 0.08578
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 109434 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62781 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62715 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62912 0.99 0.132483
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 99281 0.96 0.175663
Target:  5'- ---uAAGAUAGCGCUCGCUUUUCGAGa -3'
miRNA:   3'- agauUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99947 0.95 0.207241
Target:  5'- gUCUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 109656 0.89 0.393607
Target:  5'- gUUAAAGAUAGCACUUGUUUUUCGAu -3'
miRNA:   3'- aGAUUUCUAUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 99881 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99684 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99750 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99815 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 7159 0.88 0.431963
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 6851 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6913 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.