Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 62847 | 1.12 | 0.022284 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 62977 | 1.12 | 0.022284 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 109721 | 1.12 | 0.022284 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 62587 | 1.06 | 0.048823 |
Target: 5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- aGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 109590 | 1.03 | 0.074041 |
Target: 5'- gUUUAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 6737 | 1.02 | 0.08578 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCGAGa -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 62781 | 0.99 | 0.128749 |
Target: 5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 109434 | 0.99 | 0.128749 |
Target: 5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 62715 | 0.99 | 0.128749 |
Target: 5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 62912 | 0.99 | 0.132483 |
Target: 5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99281 | 0.96 | 0.175663 |
Target: 5'- ---uAAGAUAGCGCUCGCUUUUCGAGa -3' miRNA: 3'- agauUUCUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99947 | 0.95 | 0.207241 |
Target: 5'- gUCUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 109656 | 0.89 | 0.393607 |
Target: 5'- gUUAAAGAUAGCACUUGUUUUUCGAu -3' miRNA: 3'- aGAUUUCUAUCGUGAGCGAAAAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99881 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99815 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99750 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99684 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 7159 | 0.88 | 0.431963 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 6851 | 0.87 | 0.482826 |
Target: 5'- gUCUA----UAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 6913 | 0.87 | 0.482826 |
Target: 5'- gUCUA----UAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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