miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 4536 0.72 0.996489
Target:  5'- gUCUGA----GGUACUCGUUUUUCGAa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 4598 0.69 0.999717
Target:  5'- gUCUGA----GGCAUUCGUUUUUCGGa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 4658 0.72 0.996489
Target:  5'- gUCUGA----GGUACUCGUUUUUCGAa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 6737 1.02 0.08578
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6806 0.85 0.591903
Target:  5'- ------uAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- agauuucUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6851 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6913 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 7159 0.88 0.431963
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 19736 0.67 0.99996
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 19817 0.67 0.999985
Target:  5'- --------cAGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- agauuucuaUCGUG-----AGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 19917 0.67 0.999985
Target:  5'- --------cGGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- agauuucuaUCGUG-----AGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 20022 0.69 0.999717
Target:  5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGGGa -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23836 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23902 0.7 0.998625
Target:  5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23967 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 24033 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24099 0.7 0.998625
Target:  5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24165 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 24231 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24298 0.7 0.998625
Target:  5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.