Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 4536 | 0.72 | 0.996489 |
Target: 5'- gUCUGA----GGUACUCGUUUUUCGAa -3' miRNA: 3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 4598 | 0.69 | 0.999717 |
Target: 5'- gUCUGA----GGCAUUCGUUUUUCGGa -3' miRNA: 3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 4658 | 0.72 | 0.996489 |
Target: 5'- gUCUGA----GGUACUCGUUUUUCGAa -3' miRNA: 3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 6737 | 1.02 | 0.08578 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCGAGa -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 6806 | 0.85 | 0.591903 |
Target: 5'- ------uAUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- agauuucUAUCGUGAGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 6851 | 0.87 | 0.482826 |
Target: 5'- gUCUA----UAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 6913 | 0.87 | 0.482826 |
Target: 5'- gUCUA----UAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 7159 | 0.88 | 0.431963 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 19736 | 0.67 | 0.99996 |
Target: 5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3' miRNA: 3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 19817 | 0.67 | 0.999985 |
Target: 5'- --------cAGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- agauuucuaUCGUG-----AGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 19917 | 0.67 | 0.999985 |
Target: 5'- --------cGGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- agauuucuaUCGUG-----AGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 20022 | 0.69 | 0.999717 |
Target: 5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGGGa -3' miRNA: 3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 23836 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 23902 | 0.7 | 0.998625 |
Target: 5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 23967 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 24033 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 24099 | 0.7 | 0.998625 |
Target: 5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 24165 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 24231 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
|||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 24298 | 0.7 | 0.998625 |
Target: 5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home