Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 99947 | 0.95 | 0.207241 |
Target: 5'- gUCUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 23902 | 0.7 | 0.998625 |
Target: 5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 66676 | 0.71 | 0.997965 |
Target: 5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGAGa -3' miRNA: 3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 66610 | 0.71 | 0.997965 |
Target: 5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGAGa -3' miRNA: 3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 47949 | 0.72 | 0.996489 |
Target: 5'- gCUAAGGGcAGCGC-CGCUUugUUCGAa -3' miRNA: 3'- aGAUUUCUaUCGUGaGCGAA--AAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24231 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24033 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 23836 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99315 | 0.74 | 0.984364 |
Target: 5'- cCUAAaagcgGGGUuaaauGUACUCGUUUUUCGAGa -3' miRNA: 3'- aGAUU-----UCUAu----CGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24364 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24165 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 23967 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99447 | 0.77 | 0.921502 |
Target: 5'- gUCUAAAaAUAGCACaUGCUUUUCGAc -3' miRNA: 3'- -AGAUUUcUAUCGUGaGCGAAAAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 122238 | 0.79 | 0.887258 |
Target: 5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3' miRNA: 3'- -AGAuuUCUaUCGUG-----AGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99618 | 0.8 | 0.828071 |
Target: 5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUcGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99881 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99815 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99750 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99684 | 0.89 | 0.402989 |
Target: 5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99281 | 0.96 | 0.175663 |
Target: 5'- ---uAAGAUAGCGCUCGCUUUUCGAGa -3' miRNA: 3'- agauUUCUAUCGUGAGCGAAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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