miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 24099 0.7 0.998625
Target:  5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99315 0.74 0.984364
Target:  5'- cCUAAaagcgGGGUuaaauGUACUCGUUUUUCGAGa -3'
miRNA:   3'- aGAUU-----UCUAu----CGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23836 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24033 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24231 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 47949 0.72 0.996489
Target:  5'- gCUAAGGGcAGCGC-CGCUUugUUCGAa -3'
miRNA:   3'- aGAUUUCUaUCGUGaGCGAA--AAGCUc -5'
21195 3' -44.4 NC_004778.3 + 66610 0.71 0.997965
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 66676 0.71 0.997965
Target:  5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23902 0.7 0.998625
Target:  5'- gUCUcAAauUGGCAUUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24364 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 24165 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 23967 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 99947 0.95 0.207241
Target:  5'- gUCUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99684 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99750 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99815 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99881 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99618 0.8 0.828071
Target:  5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUcGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 122238 0.79 0.887258
Target:  5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- -AGAuuUCUaUCGUG-----AGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99447 0.77 0.921502
Target:  5'- gUCUAAAaAUAGCACaUGCUUUUCGAc -3'
miRNA:   3'- -AGAUUUcUAUCGUGaGCGAAAAGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.