miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 99750 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99815 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99881 0.89 0.402989
Target:  5'- gUUUAAAaAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99618 0.8 0.828071
Target:  5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUcGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 122238 0.79 0.887258
Target:  5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- -AGAuuUCUaUCGUG-----AGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23967 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 24165 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 24364 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 99315 0.74 0.984364
Target:  5'- cCUAAaagcgGGGUuaaauGUACUCGUUUUUCGAGa -3'
miRNA:   3'- aGAUU-----UCUAu----CGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23836 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24033 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99447 0.77 0.921502
Target:  5'- gUCUAAAaAUAGCACaUGCUUUUCGAc -3'
miRNA:   3'- -AGAUUUcUAUCGUGaGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 7159 0.88 0.431963
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 109656 0.89 0.393607
Target:  5'- gUUAAAGAUAGCACUUGUUUUUCGAu -3'
miRNA:   3'- aGAUUUCUAUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 62912 0.99 0.132483
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 109434 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62781 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62715 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6737 1.02 0.08578
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 109590 1.03 0.074041
Target:  5'- gUUUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.