miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 24364 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 29322 0.66 0.999996
Target:  5'- aUCUucGAAGGUGGCGCggCGCgcgcUGGGg -3'
miRNA:   3'- -AGA--UUUCUAUCGUGa-GCGaaaaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 30067 0.67 0.99996
Target:  5'- aUCUuuAGAcguGCGucggcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 31147 0.66 0.999995
Target:  5'- uUCUGAAGA-AGCGCUggCGCUgacgcaaUUGAGc -3'
miRNA:   3'- -AGAUUUCUaUCGUGA--GCGAaa-----AGCUC- -5'
21195 3' -44.4 NC_004778.3 + 34468 0.67 0.999985
Target:  5'- --cGAGGAgcGCAC-CGCgg-UCGAGa -3'
miRNA:   3'- agaUUUCUauCGUGaGCGaaaAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 43720 0.66 0.999992
Target:  5'- gUCUGAcGAUGGCgcuaauaACUCGUUgUUCGGc -3'
miRNA:   3'- -AGAUUuCUAUCG-------UGAGCGAaAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 47949 0.72 0.996489
Target:  5'- gCUAAGGGcAGCGC-CGCUUugUUCGAa -3'
miRNA:   3'- aGAUUUCUaUCGUGaGCGAA--AAGCUc -5'
21195 3' -44.4 NC_004778.3 + 48780 0.74 0.98227
Target:  5'- cUUAAAGAgUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- aGAUUUCU-AUCGUGaGCGAaAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62587 1.06 0.048823
Target:  5'- cCUAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- aGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62653 0.8 0.818673
Target:  5'- ---uAAGAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- agauUUCUAUCGUGAGCGAAAAGCuc -5'
21195 3' -44.4 NC_004778.3 + 62715 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62781 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62847 1.12 0.022284
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62912 0.99 0.132483
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 62977 1.12 0.022284
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 66544 0.67 0.99996
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 66610 0.71 0.997965
Target:  5'- aUCUuuAGAcguGCGucagcgccgacCUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 66676 0.71 0.997965
Target:  5'- aUCUuuGGAcguGCGucggcgccgacCUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 90401 0.68 0.999831
Target:  5'- gCUGAAGAUGGCACgcacgcgcaaauUUGCUUgUCGc- -3'
miRNA:   3'- aGAUUUCUAUCGUG------------AGCGAAaAGCuc -5'
21195 3' -44.4 NC_004778.3 + 99281 0.96 0.175663
Target:  5'- ---uAAGAUAGCGCUCGCUUUUCGAGa -3'
miRNA:   3'- agauUUCUAUCGUGAGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.