miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 62912 0.99 0.132483
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 31147 0.66 0.999995
Target:  5'- uUCUGAAGA-AGCGCUggCGCUgacgcaaUUGAGc -3'
miRNA:   3'- -AGAUUUCUaUCGUGA--GCGAaa-----AGCUC- -5'
21195 3' -44.4 NC_004778.3 + 43720 0.66 0.999992
Target:  5'- gUCUGAcGAUGGCgcuaauaACUCGUUgUUCGGc -3'
miRNA:   3'- -AGAUUuCUAUCG-------UGAGCGAaAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 62653 0.8 0.818673
Target:  5'- ---uAAGAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- agauUUCUAUCGUGAGCGAAAAGCuc -5'
21195 3' -44.4 NC_004778.3 + 6806 0.85 0.591903
Target:  5'- ------uAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- agauuucUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 30067 0.67 0.99996
Target:  5'- aUCUuuAGAcguGCGucggcgccgacCUCGCUUUUCGGGc -3'
miRNA:   3'- -AGAuuUCUau-CGU-----------GAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 4536 0.72 0.996489
Target:  5'- gUCUGA----GGUACUCGUUUUUCGAa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 48780 0.74 0.98227
Target:  5'- cUUAAAGAgUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- aGAUUUCU-AUCGUGaGCGAaAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 109656 0.89 0.393607
Target:  5'- gUUAAAGAUAGCACUUGUUUUUCGAu -3'
miRNA:   3'- aGAUUUCUAUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 62715 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62847 1.12 0.022284
Target:  5'- gUCUAAAGAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 4598 0.69 0.999717
Target:  5'- gUCUGA----GGCAUUCGUUUUUCGGa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 90401 0.68 0.999831
Target:  5'- gCUGAAGAUGGCACgcacgcgcaaauUUGCUUgUCGc- -3'
miRNA:   3'- aGAUUUCUAUCGUG------------AGCGAAaAGCuc -5'
21195 3' -44.4 NC_004778.3 + 6851 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 7159 0.88 0.431963
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5'
21195 3' -44.4 NC_004778.3 + 4658 0.72 0.996489
Target:  5'- gUCUGA----GGUACUCGUUUUUCGAa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 62781 0.99 0.128749
Target:  5'- gUCcAAAGAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGaUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6737 1.02 0.08578
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCGAGa -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 123858 0.73 0.992155
Target:  5'- ----cGGGUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- agauuUCUAUCGUGAGCGaAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 6913 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.