Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21195 | 3' | -44.4 | NC_004778.3 | + | 4536 | 0.72 | 0.996489 |
Target: 5'- gUCUGA----GGUACUCGUUUUUCGAa -3' miRNA: 3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 47949 | 0.72 | 0.996489 |
Target: 5'- gCUAAGGGcAGCGC-CGCUUugUUCGAa -3' miRNA: 3'- aGAUUUCUaUCGUGaGCGAA--AAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 4658 | 0.72 | 0.996489 |
Target: 5'- gUCUGA----GGUACUCGUUUUUCGAa -3' miRNA: 3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24231 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24033 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 23836 | 0.72 | 0.995835 |
Target: 5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 123858 | 0.73 | 0.992155 |
Target: 5'- ----cGGGUGGCGCUCGUcUUUCGGa -3' miRNA: 3'- agauuUCUAUCGUGAGCGaAAAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99315 | 0.74 | 0.984364 |
Target: 5'- cCUAAaagcgGGGUuaaauGUACUCGUUUUUCGAGa -3' miRNA: 3'- aGAUU-----UCUAu----CGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 48780 | 0.74 | 0.98227 |
Target: 5'- cUUAAAGAgUGGCACaCGCUgUUCGAGu -3' miRNA: 3'- aGAUUUCU-AUCGUGaGCGAaAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24364 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 24165 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 23967 | 0.75 | 0.971749 |
Target: 5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3' miRNA: 3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99447 | 0.77 | 0.921502 |
Target: 5'- gUCUAAAaAUAGCACaUGCUUUUCGAc -3' miRNA: 3'- -AGAUUUcUAUCGUGaGCGAAAAGCUc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 122238 | 0.79 | 0.887258 |
Target: 5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3' miRNA: 3'- -AGAuuUCUaUCGUG-----AGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 99618 | 0.8 | 0.828071 |
Target: 5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -AGAUUUcUAUcGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 62653 | 0.8 | 0.818673 |
Target: 5'- ---uAAGAUAGCACUCGUUUUUCGc- -3' miRNA: 3'- agauUUCUAUCGUGAGCGAAAAGCuc -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 6806 | 0.85 | 0.591903 |
Target: 5'- ------uAUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- agauuucUAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 6913 | 0.87 | 0.482826 |
Target: 5'- gUCUA----UAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 6851 | 0.87 | 0.482826 |
Target: 5'- gUCUA----UAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5' |
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21195 | 3' | -44.4 | NC_004778.3 | + | 7159 | 0.88 | 0.431963 |
Target: 5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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