miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 3' -44.4 NC_004778.3 + 47949 0.72 0.996489
Target:  5'- gCUAAGGGcAGCGC-CGCUUugUUCGAa -3'
miRNA:   3'- aGAUUUCUaUCGUGaGCGAA--AAGCUc -5'
21195 3' -44.4 NC_004778.3 + 4658 0.72 0.996489
Target:  5'- gUCUGA----GGUACUCGUUUUUCGAa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 4536 0.72 0.996489
Target:  5'- gUCUGA----GGUACUCGUUUUUCGAa -3'
miRNA:   3'- -AGAUUucuaUCGUGAGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 24033 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 23836 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24231 0.72 0.995835
Target:  5'- gUCUcAAauUAGUACUCGCUUUaCGAGa -3'
miRNA:   3'- -AGAuUUcuAUCGUGAGCGAAAaGCUC- -5'
21195 3' -44.4 NC_004778.3 + 123858 0.73 0.992155
Target:  5'- ----cGGGUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- agauuUCUAUCGUGAGCGaAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 99315 0.74 0.984364
Target:  5'- cCUAAaagcgGGGUuaaauGUACUCGUUUUUCGAGa -3'
miRNA:   3'- aGAUU-----UCUAu----CGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 48780 0.74 0.98227
Target:  5'- cUUAAAGAgUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- aGAUUUCU-AUCGUGaGCGAaAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 24364 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 23967 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 24165 0.75 0.971749
Target:  5'- gUCUAAAaAUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -AGAUUUcUAUCGUGAGCGAAAaGCUc -5'
21195 3' -44.4 NC_004778.3 + 99447 0.77 0.921502
Target:  5'- gUCUAAAaAUAGCACaUGCUUUUCGAc -3'
miRNA:   3'- -AGAUUUcUAUCGUGaGCGAAAAGCUc -5'
21195 3' -44.4 NC_004778.3 + 122238 0.79 0.887258
Target:  5'- aUCUuuAGAcGGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- -AGAuuUCUaUCGUG-----AGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 99618 0.8 0.828071
Target:  5'- gUCUAAAaAUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -AGAUUUcUAUcGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 62653 0.8 0.818673
Target:  5'- ---uAAGAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- agauUUCUAUCGUGAGCGAAAAGCuc -5'
21195 3' -44.4 NC_004778.3 + 6806 0.85 0.591903
Target:  5'- ------uAUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- agauuucUAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6913 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 6851 0.87 0.482826
Target:  5'- gUCUA----UAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -AGAUuucuAUCGUGAGCGAAAAGCUC- -5'
21195 3' -44.4 NC_004778.3 + 7159 0.88 0.431963
Target:  5'- gUCUAAAGAUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -AGAUUUCUAUCGUGAGCGAAAAGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.