miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21195 5' -56 NC_004778.3 + 23979 0.66 0.882223
Target:  5'- -gUCCGAGgcGCGGGaUCGGcCGCUGc -3'
miRNA:   3'- auGGGCUUuuCGCUCcAGCC-GCGACu -5'
21195 5' -56 NC_004778.3 + 116699 0.67 0.835541
Target:  5'- cGCCCGAc-AGCGGaaUCGGCGCg-- -3'
miRNA:   3'- aUGGGCUuuUCGCUccAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 29819 0.67 0.833014
Target:  5'- gUACCCGAAAAGCGAGuGUuauuuuuagacgugCGucaGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUC-CA--------------GC---CGCGaCU- -5'
21195 5' -56 NC_004778.3 + 125064 0.67 0.827051
Target:  5'- cUGCCCGAcGAuGCu-GGUCGGCGUg-- -3'
miRNA:   3'- -AUGGGCUuUU-CGcuCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 109551 0.67 0.799602
Target:  5'- cGCaCGuAAGAuagcacuGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- aUGgGC-UUUU-------CGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 21039 0.69 0.733519
Target:  5'- cGCCgCGGcaAAAGCGuGGUCGGCGg--- -3'
miRNA:   3'- aUGG-GCU--UUUCGCuCCAGCCGCgacu -5'
21195 5' -56 NC_004778.3 + 21680 0.69 0.733519
Target:  5'- cGCCCGAcGAGCGcGacgCGGUGCUGc -3'
miRNA:   3'- aUGGGCUuUUCGCuCca-GCCGCGACu -5'
21195 5' -56 NC_004778.3 + 77118 0.69 0.723508
Target:  5'- aGCUCGuuuGGCGAaaaGGcagCGGCGCUGGa -3'
miRNA:   3'- aUGGGCuuuUCGCU---CCa--GCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 60948 0.7 0.672424
Target:  5'- aACUCuu-GAGCGuGGUCGGCGCa-- -3'
miRNA:   3'- aUGGGcuuUUCGCuCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 85754 0.7 0.662069
Target:  5'- aGCCCGAucacGAGCGGGaacgaaagcGUCGGCGUgaaGAa -3'
miRNA:   3'- aUGGGCUu---UUCGCUC---------CAGCCGCGa--CU- -5'
21195 5' -56 NC_004778.3 + 12433 0.7 0.641291
Target:  5'- gUGCCgGu--GGCGGGGUCGGUGUa-- -3'
miRNA:   3'- -AUGGgCuuuUCGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 48919 0.73 0.460007
Target:  5'- gACUCGAAca-CGAGGUCGGCGCa-- -3'
miRNA:   3'- aUGGGCUUuucGCUCCAGCCGCGacu -5'
21195 5' -56 NC_004778.3 + 99654 0.73 0.460007
Target:  5'- -uCUCaAAAAGCaGGGUCGGCGCUGGc -3'
miRNA:   3'- auGGGcUUUUCGcUCCAGCCGCGACU- -5'
21195 5' -56 NC_004778.3 + 19847 0.74 0.435893
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuaaacGugcGUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU---------------C---CAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 66656 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 66722 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 20002 0.74 0.43134
Target:  5'- gUACCCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCU-----------CC-------AGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 7354 0.74 0.414294
Target:  5'- cACuuGAAAAGCGGGGUCaaUGCUGAu -3'
miRNA:   3'- aUGggCUUUUCGCUCCAGccGCGACU- -5'
21195 5' -56 NC_004778.3 + 62612 0.75 0.396807
Target:  5'- gUACauaCGuucuuaAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- -AUGg--GC------UUUUCGCUCCAGCCGCGaCU- -5'
21195 5' -56 NC_004778.3 + 99588 0.75 0.379801
Target:  5'- -uCUCaAAAAGCaGGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGcUUUUCGcUCCAGCCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.