miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 23522 0.67 0.918841
Target:  5'- aCGCGUaucgaaUCGCCGGCGcGCAaguauauGCCg -3'
miRNA:   3'- -GUGCA------GGCGGCCGCuCGUgaaau--UGG- -5'
21196 3' -53.9 NC_004778.3 + 4293 0.67 0.912945
Target:  5'- uGCGUCgGCCGGUGA-CACgc---CCa -3'
miRNA:   3'- gUGCAGgCGGCCGCUcGUGaaauuGG- -5'
21196 3' -53.9 NC_004778.3 + 61303 0.67 0.912342
Target:  5'- uCugGUuuGCUGGCGcauccaucucgccGGCcACUUUAuacGCCg -3'
miRNA:   3'- -GugCAggCGGCCGC-------------UCG-UGAAAU---UGG- -5'
21196 3' -53.9 NC_004778.3 + 100000 0.67 0.909289
Target:  5'- uGCGUauaCGCCaGCaggauugcacaaaacGAGCGCUUUAACg -3'
miRNA:   3'- gUGCAg--GCGGcCG---------------CUCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 2383 0.67 0.906803
Target:  5'- gCACGaCgGCaCGcuCGAGUACUUUAGCCc -3'
miRNA:   3'- -GUGCaGgCG-GCc-GCUCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 119554 0.67 0.906803
Target:  5'- cCGCG-CC-CgGGCG-GCACUUUGGCg -3'
miRNA:   3'- -GUGCaGGcGgCCGCuCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 38309 0.68 0.901067
Target:  5'- aCGCGaCCGCgCGcCGAGCACUcuugaauuuaaagugUAACCg -3'
miRNA:   3'- -GUGCaGGCG-GCcGCUCGUGAa--------------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 75142 0.68 0.87983
Target:  5'- aACGUuggCCGCCggGGCGGGCucacUGGCCg -3'
miRNA:   3'- gUGCA---GGCGG--CCGCUCGugaaAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 95770 0.68 0.87983
Target:  5'- gGCGcuaUCCGCgCGGC-AGCGCgccGGCCg -3'
miRNA:   3'- gUGC---AGGCG-GCCGcUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 121540 0.68 0.872505
Target:  5'- aGCG-CCGCCGGCcAGCAacac-GCCc -3'
miRNA:   3'- gUGCaGGCGGCCGcUCGUgaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 84394 0.68 0.872505
Target:  5'- aGCGcUCGUCGGCGcGCAacugUUUGGCCa -3'
miRNA:   3'- gUGCaGGCGGCCGCuCGUg---AAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 7903 0.68 0.872505
Target:  5'- gGCGUguugcUgGCCGGCG-GCGCUU--ACCu -3'
miRNA:   3'- gUGCA-----GgCGGCCGCuCGUGAAauUGG- -5'
21196 3' -53.9 NC_004778.3 + 114325 0.69 0.849213
Target:  5'- cCGCGUgCGCCuGCucgcuuuuguuGAGCGgUUUGACCc -3'
miRNA:   3'- -GUGCAgGCGGcCG-----------CUCGUgAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 113955 0.69 0.844329
Target:  5'- -cCGUCaCGuuGGCGguggagaugcgcggcAGCACUUUGGCg -3'
miRNA:   3'- guGCAG-GCggCCGC---------------UCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 92743 0.69 0.841032
Target:  5'- gCGCGUCU--UGGCGAGCGCggUGuuGCCc -3'
miRNA:   3'- -GUGCAGGcgGCCGCUCGUGaaAU--UGG- -5'
21196 3' -53.9 NC_004778.3 + 94310 0.69 0.841032
Target:  5'- uGCGUCgGCCGGC-AGCAgca-AACCu -3'
miRNA:   3'- gUGCAGgCGGCCGcUCGUgaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 36317 0.69 0.832654
Target:  5'- uGCGUgaUCGCCagcgcGGCGAGCAaUUUAGCUu -3'
miRNA:   3'- gUGCA--GGCGG-----CCGCUCGUgAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 80475 0.69 0.832654
Target:  5'- gUACGUgCGCUGGC-AGCGCaucGACCc -3'
miRNA:   3'- -GUGCAgGCGGCCGcUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 31255 0.69 0.832654
Target:  5'- gGCGU-CGCCGGUGuGC-CUcgUGGCCu -3'
miRNA:   3'- gUGCAgGCGGCCGCuCGuGAa-AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 121629 0.69 0.824087
Target:  5'- cCACG-CCGUCGGCcGAGCGCa------ -3'
miRNA:   3'- -GUGCaGGCGGCCG-CUCGUGaaauugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.