miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 13906 0.71 0.739911
Target:  5'- gCACGUUgGCCGGCGAGaCcCUUagAugCa -3'
miRNA:   3'- -GUGCAGgCGGCCGCUC-GuGAAa-UugG- -5'
21196 3' -53.9 NC_004778.3 + 97168 0.71 0.749782
Target:  5'- aCACGgcgCCGCCGGCcagcguGCGCggUUGGCa -3'
miRNA:   3'- -GUGCa--GGCGGCCGcu----CGUGa-AAUUGg -5'
21196 3' -53.9 NC_004778.3 + 33464 0.71 0.759545
Target:  5'- -cCGUCCGCaCGGCGGcGUGCUc--GCCg -3'
miRNA:   3'- guGCAGGCG-GCCGCU-CGUGAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 57085 0.71 0.769192
Target:  5'- gCGCGUCCaaGUCGGC--GCACU-UGACCa -3'
miRNA:   3'- -GUGCAGG--CGGCCGcuCGUGAaAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 124327 0.7 0.777767
Target:  5'- gGCGUCUuCCGGCGAGUaagaaagGCggcGACCg -3'
miRNA:   3'- gUGCAGGcGGCCGCUCG-------UGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 34077 0.7 0.778713
Target:  5'- cCGCGUCCGCCaGCucGUugUggucgGGCCg -3'
miRNA:   3'- -GUGCAGGCGGcCGcuCGugAaa---UUGG- -5'
21196 3' -53.9 NC_004778.3 + 40020 0.7 0.786231
Target:  5'- gCACGUCgG-CGaGCGAGCACUgcaaauucgugGGCCg -3'
miRNA:   3'- -GUGCAGgCgGC-CGCUCGUGAaa---------UUGG- -5'
21196 3' -53.9 NC_004778.3 + 1433 0.7 0.789027
Target:  5'- aCACG-CCGCCuugcauuuugugcaaGUGAGCACgUUGGCCa -3'
miRNA:   3'- -GUGCaGGCGGc--------------CGCUCGUGaAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 30534 0.7 0.806419
Target:  5'- gCGCGUCCGUacgugGGCGAGUugUgucGCUu -3'
miRNA:   3'- -GUGCAGGCGg----CCGCUCGugAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 28926 0.7 0.806419
Target:  5'- cCACGUCCuGCCGacacuCGGGCAUUUgcugucUAGCCc -3'
miRNA:   3'- -GUGCAGG-CGGCc----GCUCGUGAA------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 65276 0.7 0.814455
Target:  5'- aCGCGUCaaGCuCGGCGGccacgggcgcgacGCGCUgagUGACCg -3'
miRNA:   3'- -GUGCAGg-CG-GCCGCU-------------CGUGAa--AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 90564 0.7 0.81534
Target:  5'- aGCGcucgCCGCCGaGCGcAGCGCcgauUUUAACUa -3'
miRNA:   3'- gUGCa---GGCGGC-CGC-UCGUG----AAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 100741 0.7 0.81534
Target:  5'- aGCG-CUGCa-GCGAGCGCUauugUUGGCCg -3'
miRNA:   3'- gUGCaGGCGgcCGCUCGUGA----AAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 8643 0.69 0.823221
Target:  5'- aGCGUCCGCCGacuacgagcuuguGUuuGGGCACUUguuucGGCCc -3'
miRNA:   3'- gUGCAGGCGGC-------------CG--CUCGUGAAa----UUGG- -5'
21196 3' -53.9 NC_004778.3 + 121629 0.69 0.824087
Target:  5'- cCACG-CCGUCGGCcGAGCGCa------ -3'
miRNA:   3'- -GUGCaGGCGGCCG-CUCGUGaaauugg -5'
21196 3' -53.9 NC_004778.3 + 49017 0.69 0.824087
Target:  5'- gCGCGgugCgGCUGGCGccGUACUUUGACg -3'
miRNA:   3'- -GUGCa--GgCGGCCGCu-CGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 52302 0.69 0.824087
Target:  5'- -gUGUgCagGCCGGCGAGUACUguuacUGGCCc -3'
miRNA:   3'- guGCAgG--CGGCCGCUCGUGAa----AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 36317 0.69 0.832654
Target:  5'- uGCGUgaUCGCCagcgcGGCGAGCAaUUUAGCUu -3'
miRNA:   3'- gUGCA--GGCGG-----CCGCUCGUgAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 31255 0.69 0.832654
Target:  5'- gGCGU-CGCCGGUGuGC-CUcgUGGCCu -3'
miRNA:   3'- gUGCAgGCGGCCGCuCGuGAa-AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 80475 0.69 0.832654
Target:  5'- gUACGUgCGCUGGC-AGCGCaucGACCc -3'
miRNA:   3'- -GUGCAgGCGGCCGcUCGUGaaaUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.