miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 34077 0.7 0.778713
Target:  5'- cCGCGUCCGCCaGCucGUugUggucgGGCCg -3'
miRNA:   3'- -GUGCAGGCGGcCGcuCGugAaa---UUGG- -5'
21196 3' -53.9 NC_004778.3 + 36005 0.66 0.939953
Target:  5'- gAUGgcaCCGCaCGGCGGGCAac---GCCa -3'
miRNA:   3'- gUGCa--GGCG-GCCGCUCGUgaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 36317 0.69 0.832654
Target:  5'- uGCGUgaUCGCCagcgcGGCGAGCAaUUUAGCUu -3'
miRNA:   3'- gUGCA--GGCGG-----CCGCUCGUgAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 38126 0.66 0.953209
Target:  5'- cCGCGUCCGCa-GUGaAGCGCa--GGCCc -3'
miRNA:   3'- -GUGCAGGCGgcCGC-UCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 38309 0.68 0.901067
Target:  5'- aCGCGaCCGCgCGcCGAGCACUcuugaauuuaaagugUAACCg -3'
miRNA:   3'- -GUGCaGGCG-GCcGCUCGUGAa--------------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 38752 0.66 0.939953
Target:  5'- -cCGgCCGCUGGCuGGGCAC----GCCg -3'
miRNA:   3'- guGCaGGCGGCCG-CUCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 38883 0.74 0.595809
Target:  5'- uGCGcUCGgCGGCGAGCGCU---GCCa -3'
miRNA:   3'- gUGCaGGCgGCCGCUCGUGAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 40020 0.7 0.786231
Target:  5'- gCACGUCgG-CGaGCGAGCACUgcaaauucgugGGCCg -3'
miRNA:   3'- -GUGCAGgCgGC-CGCUCGUGAaa---------UUGG- -5'
21196 3' -53.9 NC_004778.3 + 41280 0.76 0.44695
Target:  5'- gACGUCCGUCaucuuGGCGAGCGCgcUUAGCa -3'
miRNA:   3'- gUGCAGGCGG-----CCGCUCGUGa-AAUUGg -5'
21196 3' -53.9 NC_004778.3 + 41482 0.66 0.956766
Target:  5'- aCGCG-CCGCCuGGCGugugagcAGCGCUacAACg -3'
miRNA:   3'- -GUGCaGGCGG-CCGC-------UCGUGAaaUUGg -5'
21196 3' -53.9 NC_004778.3 + 43999 0.75 0.50442
Target:  5'- aCGCG-CgGCCGGCGGGUAUUUaacggcUGACCu -3'
miRNA:   3'- -GUGCaGgCGGCCGCUCGUGAA------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 45921 0.72 0.678979
Target:  5'- cCAUGuUCCGCCGGCGA--ACUggAGCUa -3'
miRNA:   3'- -GUGC-AGGCGGCCGCUcgUGAaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 49017 0.69 0.824087
Target:  5'- gCGCGgugCgGCUGGCGccGUACUUUGACg -3'
miRNA:   3'- -GUGCa--GgCGGCCGCu-CGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 51132 0.72 0.678979
Target:  5'- -uCGUacaCGCCGGCGcgcggcugaAGCACUUUGccGCCu -3'
miRNA:   3'- guGCAg--GCGGCCGC---------UCGUGAAAU--UGG- -5'
21196 3' -53.9 NC_004778.3 + 52058 0.67 0.918841
Target:  5'- gACG-CgGCCGGCGcguGCGCaUUGcACCa -3'
miRNA:   3'- gUGCaGgCGGCCGCu--CGUGaAAU-UGG- -5'
21196 3' -53.9 NC_004778.3 + 52302 0.69 0.824087
Target:  5'- -gUGUgCagGCCGGCGAGUACUguuacUGGCCc -3'
miRNA:   3'- guGCAgG--CGGCCGCUCGUGAa----AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 55281 0.66 0.935046
Target:  5'- gUACGagUCGCUGGCGcGCGCagcGGCCg -3'
miRNA:   3'- -GUGCa-GGCGGCCGCuCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 57085 0.71 0.769192
Target:  5'- gCGCGUCCaaGUCGGC--GCACU-UGACCa -3'
miRNA:   3'- -GUGCAGG--CGGCCGcuCGUGAaAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 59374 0.76 0.465716
Target:  5'- aCGCGUCCagguuggcGCCGGUGGGCGCa--GGCCc -3'
miRNA:   3'- -GUGCAGG--------CGGCCGCUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 61303 0.67 0.912342
Target:  5'- uCugGUuuGCUGGCGcauccaucucgccGGCcACUUUAuacGCCg -3'
miRNA:   3'- -GugCAggCGGCCGC-------------UCG-UGAAAU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.