miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 143 0.66 0.944614
Target:  5'- gCGCGUCCG-CGGCGuacAGCGCc--AGCa -3'
miRNA:   3'- -GUGCAGGCgGCCGC---UCGUGaaaUUGg -5'
21196 3' -53.9 NC_004778.3 + 1433 0.7 0.789027
Target:  5'- aCACG-CCGCCuugcauuuugugcaaGUGAGCACgUUGGCCa -3'
miRNA:   3'- -GUGCaGGCGGc--------------CGCUCGUGaAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 2383 0.67 0.906803
Target:  5'- gCACGaCgGCaCGcuCGAGUACUUUAGCCc -3'
miRNA:   3'- -GUGCaGgCG-GCc-GCUCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 4046 0.76 0.465716
Target:  5'- -gUGUUCGCCGGCGGGCA----GGCCg -3'
miRNA:   3'- guGCAGGCGGCCGCUCGUgaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 4293 0.67 0.912945
Target:  5'- uGCGUCgGCCGGUGA-CACgc---CCa -3'
miRNA:   3'- gUGCAGgCGGCCGCUcGUGaaauuGG- -5'
21196 3' -53.9 NC_004778.3 + 7903 0.68 0.872505
Target:  5'- gGCGUguugcUgGCCGGCG-GCGCUU--ACCu -3'
miRNA:   3'- gUGCA-----GgCGGCCGCuCGUGAAauUGG- -5'
21196 3' -53.9 NC_004778.3 + 8643 0.69 0.823221
Target:  5'- aGCGUCCGCCGacuacgagcuuguGUuuGGGCACUUguuucGGCCc -3'
miRNA:   3'- gUGCAGGCGGC-------------CG--CUCGUGAAa----UUGG- -5'
21196 3' -53.9 NC_004778.3 + 8737 0.72 0.678979
Target:  5'- gACG-CCGCCGGCGccguGGCGCgcc-ACCc -3'
miRNA:   3'- gUGCaGGCGGCCGC----UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 13906 0.71 0.739911
Target:  5'- gCACGUUgGCCGGCGAGaCcCUUagAugCa -3'
miRNA:   3'- -GUGCAGgCGGCCGCUC-GuGAAa-UugG- -5'
21196 3' -53.9 NC_004778.3 + 14196 0.73 0.646805
Target:  5'- aCAUGaCacaGCUGGCGggacgccAGCACUUUGACCg -3'
miRNA:   3'- -GUGCaGg--CGGCCGC-------UCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 14511 0.74 0.564853
Target:  5'- cCGCGgugcgCaCGCCGGCuuGCGCUUUAGCg -3'
miRNA:   3'- -GUGCa----G-GCGGCCGcuCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 14536 0.67 0.929892
Target:  5'- uCACGUCgUGCCGGaCGAccGCGCguccaugUgcGCCa -3'
miRNA:   3'- -GUGCAG-GCGGCC-GCU--CGUGa------AauUGG- -5'
21196 3' -53.9 NC_004778.3 + 19386 0.71 0.738918
Target:  5'- cCugGUCCGCCuGGCGcaccccuguuacgGGCAg--UAGCCa -3'
miRNA:   3'- -GugCAGGCGG-CCGC-------------UCGUgaaAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 23522 0.67 0.918841
Target:  5'- aCGCGUaucgaaUCGCCGGCGcGCAaguauauGCCg -3'
miRNA:   3'- -GUGCA------GGCGGCCGCuCGUgaaau--UGG- -5'
21196 3' -53.9 NC_004778.3 + 26019 0.72 0.689289
Target:  5'- aACGUCCGCCaacauGGCG-GCACgacgUGuccGCCa -3'
miRNA:   3'- gUGCAGGCGG-----CCGCuCGUGaa--AU---UGG- -5'
21196 3' -53.9 NC_004778.3 + 28926 0.7 0.806419
Target:  5'- cCACGUCCuGCCGacacuCGGGCAUUUgcugucUAGCCc -3'
miRNA:   3'- -GUGCAGG-CGGCc----GCUCGUGAA------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 30534 0.7 0.806419
Target:  5'- gCGCGUCCGUacgugGGCGAGUugUgucGCUu -3'
miRNA:   3'- -GUGCAGGCGg----CCGCUCGugAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 30725 0.67 0.924491
Target:  5'- uGCaUCUGCCGGagaaggagcaCGAGCGCga-AGCCa -3'
miRNA:   3'- gUGcAGGCGGCC----------GCUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 31255 0.69 0.832654
Target:  5'- gGCGU-CGCCGGUGuGC-CUcgUGGCCu -3'
miRNA:   3'- gUGCAgGCGGCCGCuCGuGAa-AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 33464 0.71 0.759545
Target:  5'- -cCGUCCGCaCGGCGGcGUGCUc--GCCg -3'
miRNA:   3'- guGCAGGCG-GCCGCU-CGUGAaauUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.