miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 126907 0.66 0.953209
Target:  5'- gGCGgcgCCGCaugcuGGacaaguCGAGCACUUcGGCCa -3'
miRNA:   3'- gUGCa--GGCGg----CC------GCUCGUGAAaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 124327 0.7 0.777767
Target:  5'- gGCGUCUuCCGGCGAGUaagaaagGCggcGACCg -3'
miRNA:   3'- gUGCAGGcGGCCGCUCG-------UGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 123974 0.66 0.95715
Target:  5'- aCACGUUgGCCauGGCaGGCGCgcaguuGCCu -3'
miRNA:   3'- -GUGCAGgCGG--CCGcUCGUGaaau--UGG- -5'
21196 3' -53.9 NC_004778.3 + 121629 0.69 0.824087
Target:  5'- cCACG-CCGUCGGCcGAGCGCa------ -3'
miRNA:   3'- -GUGCaGGCGGCCG-CUCGUGaaauugg -5'
21196 3' -53.9 NC_004778.3 + 121540 0.68 0.872505
Target:  5'- aGCG-CCGCCGGCcAGCAacac-GCCc -3'
miRNA:   3'- gUGCaGGCGGCCGcUCGUgaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 119554 0.67 0.906803
Target:  5'- cCGCG-CC-CgGGCG-GCACUUUGGCg -3'
miRNA:   3'- -GUGCaGGcGgCCGCuCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 118783 0.66 0.944614
Target:  5'- gCGCGgcgCgGCCGGCGcGCACaauuacgaGGCCc -3'
miRNA:   3'- -GUGCa--GgCGGCCGCuCGUGaaa-----UUGG- -5'
21196 3' -53.9 NC_004778.3 + 114325 0.69 0.849213
Target:  5'- cCGCGUgCGCCuGCucgcuuuuguuGAGCGgUUUGACCc -3'
miRNA:   3'- -GUGCAgGCGGcCG-----------CUCGUgAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 113955 0.69 0.844329
Target:  5'- -cCGUCaCGuuGGCGguggagaugcgcggcAGCACUUUGGCg -3'
miRNA:   3'- guGCAG-GCggCCGC---------------UCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 111280 0.66 0.953209
Target:  5'- gCGCGUuagcgccuuggCCGCCguGGUGAGCGUUUUGAUg -3'
miRNA:   3'- -GUGCA-----------GGCGG--CCGCUCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 108343 0.66 0.953209
Target:  5'- aACGUCCGCuCcGCGGGCugcaccgcGCUgacGCCu -3'
miRNA:   3'- gUGCAGGCG-GcCGCUCG--------UGAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 108257 1.11 0.003134
Target:  5'- gCACGUCCGCCGGCGAGCACUUUAACCc -3'
miRNA:   3'- -GUGCAGGCGGCCGCUCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 106881 0.66 0.955992
Target:  5'- gGCGUUaaaGCCGaGgaggaucagacaacCGAGCGCUUgAACCa -3'
miRNA:   3'- gUGCAGg--CGGC-C--------------GCUCGUGAAaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 104347 0.71 0.716854
Target:  5'- aCACGUUgGCCGGCGuacgugacucggucGGCGCgc--GCCu -3'
miRNA:   3'- -GUGCAGgCGGCCGC--------------UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 100741 0.7 0.81534
Target:  5'- aGCG-CUGCa-GCGAGCGCUauugUUGGCCg -3'
miRNA:   3'- gUGCaGGCGgcCGCUCGUGA----AAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 100000 0.67 0.909289
Target:  5'- uGCGUauaCGCCaGCaggauugcacaaaacGAGCGCUUUAACg -3'
miRNA:   3'- gUGCAg--GCGGcCG---------------CUCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 97168 0.71 0.749782
Target:  5'- aCACGgcgCCGCCGGCcagcguGCGCggUUGGCa -3'
miRNA:   3'- -GUGCa--GGCGGCCGcu----CGUGa-AAUUGg -5'
21196 3' -53.9 NC_004778.3 + 96533 0.78 0.3681
Target:  5'- uCGCGUCUGCgGGCGuGCACgc--GCCg -3'
miRNA:   3'- -GUGCAGGCGgCCGCuCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 95967 0.76 0.44695
Target:  5'- cCAUGU-CGUCGGCGAGCACgcc-GCCg -3'
miRNA:   3'- -GUGCAgGCGGCCGCUCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 95770 0.68 0.87983
Target:  5'- gGCGcuaUCCGCgCGGC-AGCGCgccGGCCg -3'
miRNA:   3'- gUGC---AGGCG-GCCGcUCGUGaaaUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.