miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 38309 0.68 0.901067
Target:  5'- aCGCGaCCGCgCGcCGAGCACUcuugaauuuaaagugUAACCg -3'
miRNA:   3'- -GUGCaGGCG-GCcGCUCGUGAa--------------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 28926 0.7 0.806419
Target:  5'- cCACGUCCuGCCGacacuCGGGCAUUUgcugucUAGCCc -3'
miRNA:   3'- -GUGCAGG-CGGCc----GCUCGUGAA------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 90564 0.7 0.81534
Target:  5'- aGCGcucgCCGCCGaGCGcAGCGCcgauUUUAACUa -3'
miRNA:   3'- gUGCa---GGCGGC-CGC-UCGUG----AAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 8643 0.69 0.823221
Target:  5'- aGCGUCCGCCGacuacgagcuuguGUuuGGGCACUUguuucGGCCc -3'
miRNA:   3'- gUGCAGGCGGC-------------CG--CUCGUGAAa----UUGG- -5'
21196 3' -53.9 NC_004778.3 + 121629 0.69 0.824087
Target:  5'- cCACG-CCGUCGGCcGAGCGCa------ -3'
miRNA:   3'- -GUGCaGGCGGCCG-CUCGUGaaauugg -5'
21196 3' -53.9 NC_004778.3 + 114325 0.69 0.849213
Target:  5'- cCGCGUgCGCCuGCucgcuuuuguuGAGCGgUUUGACCc -3'
miRNA:   3'- -GUGCAgGCGGcCG-----------CUCGUgAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 121540 0.68 0.872505
Target:  5'- aGCG-CCGCCGGCcAGCAacac-GCCc -3'
miRNA:   3'- gUGCaGGCGGCCGcUCGUgaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 95770 0.68 0.87983
Target:  5'- gGCGcuaUCCGCgCGGC-AGCGCgccGGCCg -3'
miRNA:   3'- gUGC---AGGCG-GCCGcUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 75142 0.68 0.87983
Target:  5'- aACGUuggCCGCCggGGCGGGCucacUGGCCg -3'
miRNA:   3'- gUGCA---GGCGG--CCGCUCGugaaAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 1433 0.7 0.789027
Target:  5'- aCACG-CCGCCuugcauuuugugcaaGUGAGCACgUUGGCCa -3'
miRNA:   3'- -GUGCaGGCGGc--------------CGCUCGUGaAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 40020 0.7 0.786231
Target:  5'- gCACGUCgG-CGaGCGAGCACUgcaaauucgugGGCCg -3'
miRNA:   3'- -GUGCAGgCgGC-CGCUCGUGAaa---------UUGG- -5'
21196 3' -53.9 NC_004778.3 + 124327 0.7 0.777767
Target:  5'- gGCGUCUuCCGGCGAGUaagaaagGCggcGACCg -3'
miRNA:   3'- gUGCAGGcGGCCGCUCG-------UGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 4046 0.76 0.465716
Target:  5'- -gUGUUCGCCGGCGGGCA----GGCCg -3'
miRNA:   3'- guGCAGGCGGCCGCUCGUgaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 43999 0.75 0.50442
Target:  5'- aCGCG-CgGCCGGCGGGUAUUUaacggcUGACCu -3'
miRNA:   3'- -GUGCaGgCGGCCGCUCGUGAA------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 14196 0.73 0.646805
Target:  5'- aCAUGaCacaGCUGGCGggacgccAGCACUUUGACCg -3'
miRNA:   3'- -GUGCaGg--CGGCCGC-------UCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 8737 0.72 0.678979
Target:  5'- gACG-CCGCCGGCGccguGGCGCgcc-ACCc -3'
miRNA:   3'- gUGCaGGCGGCCGC----UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 51132 0.72 0.678979
Target:  5'- -uCGUacaCGCCGGCGcgcggcugaAGCACUUUGccGCCu -3'
miRNA:   3'- guGCAg--GCGGCCGC---------UCGUGAAAU--UGG- -5'
21196 3' -53.9 NC_004778.3 + 104347 0.71 0.716854
Target:  5'- aCACGUUgGCCGGCGuacgugacucggucGGCGCgc--GCCu -3'
miRNA:   3'- -GUGCAGgCGGCCGC--------------UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 13906 0.71 0.739911
Target:  5'- gCACGUUgGCCGGCGAGaCcCUUagAugCa -3'
miRNA:   3'- -GUGCAGgCGGCCGCUC-GuGAAa-UugG- -5'
21196 3' -53.9 NC_004778.3 + 33464 0.71 0.759545
Target:  5'- -cCGUCCGCaCGGCGGcGUGCUc--GCCg -3'
miRNA:   3'- guGCAGGCG-GCCGCU-CGUGAaauUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.