Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21196 | 3' | -53.9 | NC_004778.3 | + | 123974 | 0.66 | 0.95715 |
Target: 5'- aCACGUUgGCCauGGCaGGCGCgcaguuGCCu -3' miRNA: 3'- -GUGCAGgCGG--CCGcUCGUGaaau--UGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 31255 | 0.69 | 0.832654 |
Target: 5'- gGCGU-CGCCGGUGuGC-CUcgUGGCCu -3' miRNA: 3'- gUGCAgGCGGCCGCuCGuGAa-AUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 49017 | 0.69 | 0.824087 |
Target: 5'- gCGCGgugCgGCUGGCGccGUACUUUGACg -3' miRNA: 3'- -GUGCa--GgCGGCCGCu-CGUGAAAUUGg -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 108257 | 1.11 | 0.003134 |
Target: 5'- gCACGUCCGCCGGCGAGCACUUUAACCc -3' miRNA: 3'- -GUGCAGGCGGCCGCUCGUGAAAUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 143 | 0.66 | 0.944614 |
Target: 5'- gCGCGUCCG-CGGCGuacAGCGCc--AGCa -3' miRNA: 3'- -GUGCAGGCgGCCGC---UCGUGaaaUUGg -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 91365 | 0.66 | 0.944614 |
Target: 5'- gCGCGUCgCGCCGcaGCG-GCAU-UUGACUc -3' miRNA: 3'- -GUGCAG-GCGGC--CGCuCGUGaAAUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 52058 | 0.67 | 0.918841 |
Target: 5'- gACG-CgGCCGGCGcguGCGCaUUGcACCa -3' miRNA: 3'- gUGCaGgCGGCCGCu--CGUGaAAU-UGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 100000 | 0.67 | 0.909289 |
Target: 5'- uGCGUauaCGCCaGCaggauugcacaaaacGAGCGCUUUAACg -3' miRNA: 3'- gUGCAg--GCGGcCG---------------CUCGUGAAAUUGg -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 84394 | 0.68 | 0.872505 |
Target: 5'- aGCGcUCGUCGGCGcGCAacugUUUGGCCa -3' miRNA: 3'- gUGCaGGCGGCCGCuCGUg---AAAUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 36317 | 0.69 | 0.832654 |
Target: 5'- uGCGUgaUCGCCagcgcGGCGAGCAaUUUAGCUu -3' miRNA: 3'- gUGCA--GGCGG-----CCGCUCGUgAAAUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 113955 | 0.69 | 0.844329 |
Target: 5'- -cCGUCaCGuuGGCGguggagaugcgcggcAGCACUUUGGCg -3' miRNA: 3'- guGCAG-GCggCCGC---------------UCGUGAAAUUGg -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 2383 | 0.67 | 0.906803 |
Target: 5'- gCACGaCgGCaCGcuCGAGUACUUUAGCCc -3' miRNA: 3'- -GUGCaGgCG-GCc-GCUCGUGAAAUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 41482 | 0.66 | 0.956766 |
Target: 5'- aCGCG-CCGCCuGGCGugugagcAGCGCUacAACg -3' miRNA: 3'- -GUGCaGGCGG-CCGC-------UCGUGAaaUUGg -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 92743 | 0.69 | 0.841032 |
Target: 5'- gCGCGUCU--UGGCGAGCGCggUGuuGCCc -3' miRNA: 3'- -GUGCAGGcgGCCGCUCGUGaaAU--UGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 108343 | 0.66 | 0.953209 |
Target: 5'- aACGUCCGCuCcGCGGGCugcaccgcGCUgacGCCu -3' miRNA: 3'- gUGCAGGCG-GcCGCUCG--------UGAaauUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 119554 | 0.67 | 0.906803 |
Target: 5'- cCGCG-CC-CgGGCG-GCACUUUGGCg -3' miRNA: 3'- -GUGCaGGcGgCCGCuCGUGAAAUUGg -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 94310 | 0.69 | 0.841032 |
Target: 5'- uGCGUCgGCCGGC-AGCAgca-AACCu -3' miRNA: 3'- gUGCAGgCGGCCGcUCGUgaaaUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 80475 | 0.69 | 0.832654 |
Target: 5'- gUACGUgCGCUGGC-AGCGCaucGACCc -3' miRNA: 3'- -GUGCAgGCGGCCGcUCGUGaaaUUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 86641 | 0.66 | 0.949032 |
Target: 5'- aACGUCCGCCGcCGAcaaCGCgugcGCCa -3' miRNA: 3'- gUGCAGGCGGCcGCUc--GUGaaauUGG- -5' |
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21196 | 3' | -53.9 | NC_004778.3 | + | 38752 | 0.66 | 0.939953 |
Target: 5'- -cCGgCCGCUGGCuGGGCAC----GCCg -3' miRNA: 3'- guGCaGGCGGCCG-CUCGUGaaauUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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