miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 108257 1.11 0.003134
Target:  5'- gCACGUCCGCCGGCGAGCACUUUAACCc -3'
miRNA:   3'- -GUGCAGGCGGCCGCUCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 91418 0.78 0.3681
Target:  5'- aCACGUUCGCgCGaGCGuGCACUUUAAgCa -3'
miRNA:   3'- -GUGCAGGCG-GC-CGCuCGUGAAAUUgG- -5'
21196 3' -53.9 NC_004778.3 + 96533 0.78 0.3681
Target:  5'- uCGCGUCUGCgGGCGuGCACgc--GCCg -3'
miRNA:   3'- -GUGCAGGCGgCCGCuCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 86032 0.78 0.3681
Target:  5'- uCGCuGUCCGCCGGCucGCACgccuGCCg -3'
miRNA:   3'- -GUG-CAGGCGGCCGcuCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 95967 0.76 0.44695
Target:  5'- cCAUGU-CGUCGGCGAGCACgcc-GCCg -3'
miRNA:   3'- -GUGCAgGCGGCCGCUCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 41280 0.76 0.44695
Target:  5'- gACGUCCGUCaucuuGGCGAGCGCgcUUAGCa -3'
miRNA:   3'- gUGCAGGCGG-----CCGCUCGUGa-AAUUGg -5'
21196 3' -53.9 NC_004778.3 + 59374 0.76 0.465716
Target:  5'- aCGCGUCCagguuggcGCCGGUGGGCGCa--GGCCc -3'
miRNA:   3'- -GUGCAGG--------CGGCCGCUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 4046 0.76 0.465716
Target:  5'- -gUGUUCGCCGGCGGGCA----GGCCg -3'
miRNA:   3'- guGCAGGCGGCCGCUCGUgaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 43999 0.75 0.50442
Target:  5'- aCGCG-CgGCCGGCGGGUAUUUaacggcUGACCu -3'
miRNA:   3'- -GUGCaGgCGGCCGCUCGUGAA------AUUGG- -5'
21196 3' -53.9 NC_004778.3 + 69295 0.74 0.554623
Target:  5'- cCACGaUUCGCCGGCcAGCACca-AACCg -3'
miRNA:   3'- -GUGC-AGGCGGCCGcUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 14511 0.74 0.564853
Target:  5'- cCGCGgugcgCaCGCCGGCuuGCGCUUUAGCg -3'
miRNA:   3'- -GUGCa----G-GCGGCCGcuCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 38883 0.74 0.595809
Target:  5'- uGCGcUCGgCGGCGAGCGCU---GCCa -3'
miRNA:   3'- gUGCaGGCgGCCGCUCGUGAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 14196 0.73 0.646805
Target:  5'- aCAUGaCacaGCUGGCGggacgccAGCACUUUGACCg -3'
miRNA:   3'- -GUGCaGg--CGGCCGC-------UCGUGAAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 67324 0.72 0.678979
Target:  5'- -cUGUUCGCCGGCGgcGGCACcuacuACCa -3'
miRNA:   3'- guGCAGGCGGCCGC--UCGUGaaau-UGG- -5'
21196 3' -53.9 NC_004778.3 + 45921 0.72 0.678979
Target:  5'- cCAUGuUCCGCCGGCGA--ACUggAGCUa -3'
miRNA:   3'- -GUGC-AGGCGGCCGCUcgUGAaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 8737 0.72 0.678979
Target:  5'- gACG-CCGCCGGCGccguGGCGCgcc-ACCc -3'
miRNA:   3'- gUGCaGGCGGCCGC----UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 51132 0.72 0.678979
Target:  5'- -uCGUacaCGCCGGCGcgcggcugaAGCACUUUGccGCCu -3'
miRNA:   3'- guGCAg--GCGGCCGC---------UCGUGAAAU--UGG- -5'
21196 3' -53.9 NC_004778.3 + 26019 0.72 0.689289
Target:  5'- aACGUCCGCCaacauGGCG-GCACgacgUGuccGCCa -3'
miRNA:   3'- gUGCAGGCGG-----CCGCuCGUGaa--AU---UGG- -5'
21196 3' -53.9 NC_004778.3 + 104347 0.71 0.716854
Target:  5'- aCACGUUgGCCGGCGuacgugacucggucGGCGCgc--GCCu -3'
miRNA:   3'- -GUGCAGgCGGCCGC--------------UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 19386 0.71 0.738918
Target:  5'- cCugGUCCGCCuGGCGcaccccuguuacgGGCAg--UAGCCa -3'
miRNA:   3'- -GugCAGGCGG-CCGC-------------UCGUgaaAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.