miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 23930 0.71 0.739581
Target:  5'- aCGCCCGUACucgaaaCGCgaggcGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 91144 0.71 0.739581
Target:  5'- cGCGCggucgCGUGCgCGCUGGCGCa------ -3'
miRNA:   3'- -CGCGg----GCAUG-GCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 16956 0.71 0.749576
Target:  5'- -gGCUCGaguucucgGCCGCUGGCGC---GAGCg -3'
miRNA:   3'- cgCGGGCa-------UGGCGACCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 72486 0.7 0.759461
Target:  5'- uGUGCCaaGUGCCGCcgucggUGGCGUUGAGcgucGACg -3'
miRNA:   3'- -CGCGGg-CAUGGCG------ACCGCGAUUU----UUG- -5'
21197 3' -53.7 NC_004778.3 + 37727 0.7 0.769227
Target:  5'- aGCaCUCGUACUGUUGGCGCa------ -3'
miRNA:   3'- -CGcGGGCAUGGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 77046 0.7 0.778863
Target:  5'- aCGUuuGUGgCGCcgGGCGUUAAAAAUg -3'
miRNA:   3'- cGCGggCAUgGCGa-CCGCGAUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 34218 0.7 0.778863
Target:  5'- uGCGCCaaauGUGCUGCcacccGGCGCUGAc--- -3'
miRNA:   3'- -CGCGGg---CAUGGCGa----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24127 0.7 0.788359
Target:  5'- aCGCCCGUACucgaaaCGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24326 0.7 0.788359
Target:  5'- aCGCCCGUACucgaaaCGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 57466 0.7 0.805983
Target:  5'- uGUGCCUGggcaagcUGCCGCUGccGCGCgacggAAAAGCc -3'
miRNA:   3'- -CGCGGGC-------AUGGCGAC--CGCGa----UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 7549 0.7 0.806894
Target:  5'- gGCGCgCGaauuUGCuUGCUGGCGUUGcAGAACa -3'
miRNA:   3'- -CGCGgGC----AUG-GCGACCGCGAU-UUUUG- -5'
21197 3' -53.7 NC_004778.3 + 123965 0.69 0.815914
Target:  5'- aGCGUCCGUACaCGUUGGCcaUGGcAGGCg -3'
miRNA:   3'- -CGCGGGCAUG-GCGACCGcgAUU-UUUG- -5'
21197 3' -53.7 NC_004778.3 + 120646 0.69 0.815914
Target:  5'- cGCGCCCGccgccucGCCGCUGaaGCUGcu-GCg -3'
miRNA:   3'- -CGCGGGCa------UGGCGACcgCGAUuuuUG- -5'
21197 3' -53.7 NC_004778.3 + 119555 0.69 0.824757
Target:  5'- cGCGCCCGgGCgGCacuuuggcGGCGCguaAGGAGCc -3'
miRNA:   3'- -CGCGGGCaUGgCGa-------CCGCGa--UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 17235 0.69 0.824757
Target:  5'- cGCGgCCGcUAUgCGCgagGGCGCcGAGAACg -3'
miRNA:   3'- -CGCgGGC-AUG-GCGa--CCGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 81460 0.69 0.824757
Target:  5'- uGCGCgCGUGCgCGCguacUGGCGCgugcuuucGAACa -3'
miRNA:   3'- -CGCGgGCAUG-GCG----ACCGCGauu-----UUUG- -5'
21197 3' -53.7 NC_004778.3 + 106297 0.69 0.832556
Target:  5'- aGCGCCCGUGCCcgccgcagccccaGCcccgguuugauUGcGCGC-AAAGACa -3'
miRNA:   3'- -CGCGGGCAUGG-------------CG-----------AC-CGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 19374 0.69 0.841875
Target:  5'- cGUGCCCGgaaaccugguCCGcCUGGCGCa------ -3'
miRNA:   3'- -CGCGGGCau--------GGC-GACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 65965 0.69 0.850135
Target:  5'- cCGCCCGcGCCGaagaaGGCGCUuucgccGAACg -3'
miRNA:   3'- cGCGGGCaUGGCga---CCGCGAuu----UUUG- -5'
21197 3' -53.7 NC_004778.3 + 80815 0.69 0.850135
Target:  5'- aGCGCUCGUuggaCGCuaUGaCGCUAAAAACu -3'
miRNA:   3'- -CGCGGGCAug--GCG--ACcGCGAUUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.