miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 107035 1.11 0.002668
Target:  5'- cGCGCCCGUACCGCUGGCGCUAAAAACc -3'
miRNA:   3'- -CGCGGGCAUGGCGACCGCGAUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 34432 0.8 0.272444
Target:  5'- cGUGCCCGUACUGCUGuacacgggcacgcuGCGCgucgAGGAGCg -3'
miRNA:   3'- -CGCGGGCAUGGCGAC--------------CGCGa---UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 96964 0.79 0.302184
Target:  5'- cGUGCCaCG-ACCGCUGGUGC-AAAGGCg -3'
miRNA:   3'- -CGCGG-GCaUGGCGACCGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 59217 0.78 0.372322
Target:  5'- aCGCCCGUGCUGUccGGCGCUu-GGGCg -3'
miRNA:   3'- cGCGGGCAUGGCGa-CCGCGAuuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 46213 0.77 0.398039
Target:  5'- uCGCCCGUGCaGCUGGCcgccGCUGAAAu- -3'
miRNA:   3'- cGCGGGCAUGgCGACCG----CGAUUUUug -5'
21197 3' -53.7 NC_004778.3 + 74833 0.77 0.406861
Target:  5'- uGCGCCCGUAgUCGgUGGCGCcgauAGACu -3'
miRNA:   3'- -CGCGGGCAU-GGCgACCGCGauu-UUUG- -5'
21197 3' -53.7 NC_004778.3 + 53940 0.76 0.452746
Target:  5'- uGCGCCgCGUGCCGCacuaGCGUUAAGGAg -3'
miRNA:   3'- -CGCGG-GCAUGGCGac--CGCGAUUUUUg -5'
21197 3' -53.7 NC_004778.3 + 49612 0.74 0.56237
Target:  5'- uGCGagCGcACUGCgGGCGCUAAGAACa -3'
miRNA:   3'- -CGCggGCaUGGCGaCCGCGAUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 1988 0.74 0.572764
Target:  5'- -aGCUCGUGCCGCUgcGGCGC---AAGCu -3'
miRNA:   3'- cgCGGGCAUGGCGA--CCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 47715 0.74 0.583203
Target:  5'- aCGCCUGcugaaaacgaUGCCGCUGGCGCa------ -3'
miRNA:   3'- cGCGGGC----------AUGGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 61574 0.73 0.59263
Target:  5'- uGCGCggcggucuuguagUCGUACgCGCUGGCGCUAc---- -3'
miRNA:   3'- -CGCG-------------GGCAUG-GCGACCGCGAUuuuug -5'
21197 3' -53.7 NC_004778.3 + 110332 0.73 0.593679
Target:  5'- cGCGCCCGaACCaGCuuugccaauUGGgGUUGAAGACg -3'
miRNA:   3'- -CGCGGGCaUGG-CG---------ACCgCGAUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 56915 0.73 0.604185
Target:  5'- uCGUCCGcGCUGCUGGCGC---AAACu -3'
miRNA:   3'- cGCGGGCaUGGCGACCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 21130 0.73 0.614713
Target:  5'- uCGCCgaCGUGCCGCUcugcGGCGUcGGGAGCg -3'
miRNA:   3'- cGCGG--GCAUGGCGA----CCGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 49014 0.72 0.646348
Target:  5'- uGCGCgCgGUGCgGCUGGCGCcguacuuuGACg -3'
miRNA:   3'- -CGCG-GgCAUGgCGACCGCGauuu----UUG- -5'
21197 3' -53.7 NC_004778.3 + 9884 0.72 0.65688
Target:  5'- cGCGCCgccaaaGUGCCGCccgGGCGCgguguGCg -3'
miRNA:   3'- -CGCGGg-----CAUGGCGa--CCGCGauuuuUG- -5'
21197 3' -53.7 NC_004778.3 + 57394 0.72 0.698707
Target:  5'- cGCGCCacuuUGCCaGCUGGCgGCUGauGAAGCc -3'
miRNA:   3'- -CGCGGgc--AUGG-CGACCG-CGAU--UUUUG- -5'
21197 3' -53.7 NC_004778.3 + 24061 0.71 0.719302
Target:  5'- aCGCCCGUACucgaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG--------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23864 0.71 0.719302
Target:  5'- aCGCCCGUACucgaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG--------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24259 0.71 0.729486
Target:  5'- aCGCCCGUACucgaaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG---------GCGa---CCGCGAUUuuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.