miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 7549 0.7 0.806894
Target:  5'- gGCGCgCGaauuUGCuUGCUGGCGUUGcAGAACa -3'
miRNA:   3'- -CGCGgGC----AUG-GCGACCGCGAU-UUUUG- -5'
21197 3' -53.7 NC_004778.3 + 24259 0.71 0.729486
Target:  5'- aCGCCCGUACucgaaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG---------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23930 0.71 0.739581
Target:  5'- aCGCCCGUACucgaaaCGCgaggcGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 72486 0.7 0.759461
Target:  5'- uGUGCCaaGUGCCGCcgucggUGGCGUUGAGcgucGACg -3'
miRNA:   3'- -CGCGGg-CAUGGCG------ACCGCGAUUU----UUG- -5'
21197 3' -53.7 NC_004778.3 + 37727 0.7 0.769227
Target:  5'- aGCaCUCGUACUGUUGGCGCa------ -3'
miRNA:   3'- -CGcGGGCAUGGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 34218 0.7 0.778863
Target:  5'- uGCGCCaaauGUGCUGCcacccGGCGCUGAc--- -3'
miRNA:   3'- -CGCGGg---CAUGGCGa----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24127 0.7 0.788359
Target:  5'- aCGCCCGUACucgaaaCGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24326 0.7 0.788359
Target:  5'- aCGCCCGUACucgaaaCGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 57466 0.7 0.805983
Target:  5'- uGUGCCUGggcaagcUGCCGCUGccGCGCgacggAAAAGCc -3'
miRNA:   3'- -CGCGGGC-------AUGGCGAC--CGCGa----UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 24061 0.71 0.719302
Target:  5'- aCGCCCGUACucgaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG--------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23864 0.71 0.719302
Target:  5'- aCGCCCGUACucgaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG--------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 57394 0.72 0.698707
Target:  5'- cGCGCCacuuUGCCaGCUGGCgGCUGauGAAGCc -3'
miRNA:   3'- -CGCGGgc--AUGG-CGACCG-CGAU--UUUUG- -5'
21197 3' -53.7 NC_004778.3 + 74833 0.77 0.406861
Target:  5'- uGCGCCCGUAgUCGgUGGCGCcgauAGACu -3'
miRNA:   3'- -CGCGGGCAU-GGCgACCGCGauu-UUUG- -5'
21197 3' -53.7 NC_004778.3 + 49612 0.74 0.56237
Target:  5'- uGCGagCGcACUGCgGGCGCUAAGAACa -3'
miRNA:   3'- -CGCggGCaUGGCGaCCGCGAUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 1988 0.74 0.572764
Target:  5'- -aGCUCGUGCCGCUgcGGCGC---AAGCu -3'
miRNA:   3'- cgCGGGCAUGGCGA--CCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 47715 0.74 0.583203
Target:  5'- aCGCCUGcugaaaacgaUGCCGCUGGCGCa------ -3'
miRNA:   3'- cGCGGGC----------AUGGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 61574 0.73 0.59263
Target:  5'- uGCGCggcggucuuguagUCGUACgCGCUGGCGCUAc---- -3'
miRNA:   3'- -CGCG-------------GGCAUG-GCGACCGCGAUuuuug -5'
21197 3' -53.7 NC_004778.3 + 56915 0.73 0.604185
Target:  5'- uCGUCCGcGCUGCUGGCGC---AAACu -3'
miRNA:   3'- cGCGGGCaUGGCGACCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 21130 0.73 0.614713
Target:  5'- uCGCCgaCGUGCCGCUcugcGGCGUcGGGAGCg -3'
miRNA:   3'- cGCGG--GCAUGGCGA----CCGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 9884 0.72 0.65688
Target:  5'- cGCGCCgccaaaGUGCCGCccgGGCGCgguguGCg -3'
miRNA:   3'- -CGCGGg-----CAUGGCGa--CCGCGauuuuUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.