miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 850 0.68 0.881005
Target:  5'- aUGCCCGccgACaaaGUUGGCGCUGc-AGCa -3'
miRNA:   3'- cGCGGGCa--UGg--CGACCGCGAUuuUUG- -5'
21197 3' -53.7 NC_004778.3 + 931 0.68 0.881005
Target:  5'- aUGCCCGccgACaaaGUUGGCGCUGc-AGCa -3'
miRNA:   3'- cGCGGGCa--UGg--CGACCGCGAUuuUUG- -5'
21197 3' -53.7 NC_004778.3 + 1988 0.74 0.572764
Target:  5'- -aGCUCGUGCCGCUgcGGCGC---AAGCu -3'
miRNA:   3'- cgCGGGCAUGGCGA--CCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 7549 0.7 0.806894
Target:  5'- gGCGCgCGaauuUGCuUGCUGGCGUUGcAGAACa -3'
miRNA:   3'- -CGCGgGC----AUG-GCGACCGCGAU-UUUUG- -5'
21197 3' -53.7 NC_004778.3 + 9884 0.72 0.65688
Target:  5'- cGCGCCgccaaaGUGCCGCccgGGCGCgguguGCg -3'
miRNA:   3'- -CGCGGg-----CAUGGCGa--CCGCGauuuuUG- -5'
21197 3' -53.7 NC_004778.3 + 10662 0.68 0.858185
Target:  5'- uGCGCgCCG-GCCGCgccGCGCccGAAGCg -3'
miRNA:   3'- -CGCG-GGCaUGGCGac-CGCGauUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 11635 0.66 0.936415
Target:  5'- uCGCUgGUgcGCCGCUuGCGCUuguuGGACa -3'
miRNA:   3'- cGCGGgCA--UGGCGAcCGCGAuu--UUUG- -5'
21197 3' -53.7 NC_004778.3 + 16956 0.71 0.749576
Target:  5'- -gGCUCGaguucucgGCCGCUGGCGC---GAGCg -3'
miRNA:   3'- cgCGGGCa-------UGGCGACCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 17235 0.69 0.824757
Target:  5'- cGCGgCCGcUAUgCGCgagGGCGCcGAGAACg -3'
miRNA:   3'- -CGCgGGC-AUG-GCGa--CCGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 17861 0.67 0.914292
Target:  5'- cGCGCgCCGU-CCGUgacuuUGGCGCg------ -3'
miRNA:   3'- -CGCG-GGCAuGGCG-----ACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 19374 0.69 0.841875
Target:  5'- cGUGCCCGgaaaccugguCCGcCUGGCGCa------ -3'
miRNA:   3'- -CGCGGGCau--------GGC-GACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 21130 0.73 0.614713
Target:  5'- uCGCCgaCGUGCCGCUcugcGGCGUcGGGAGCg -3'
miRNA:   3'- cGCGG--GCAUGGCGA----CCGCGaUUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 22374 0.66 0.950357
Target:  5'- uCGCCCGUGgCGUUGGgGuCUucguGGAUg -3'
miRNA:   3'- cGCGGGCAUgGCGACCgC-GAuu--UUUG- -5'
21197 3' -53.7 NC_004778.3 + 23798 0.66 0.941313
Target:  5'- aCGCUCGUACCagaaaaGCggggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23864 0.71 0.719302
Target:  5'- aCGCCCGUACucgaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG--------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23930 0.71 0.739581
Target:  5'- aCGCCCGUACucgaaaCGCgaggcGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23995 0.66 0.941313
Target:  5'- aCGCUCGUACCagaaaaGCggggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24061 0.71 0.719302
Target:  5'- aCGCCCGUACucgaaaagCGCggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG--------GCGa---CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24127 0.7 0.788359
Target:  5'- aCGCCCGUACucgaaaCGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUG------GCGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24193 0.66 0.941313
Target:  5'- aCGCUCGUACCagaaaaGCggggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.