miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21201 5' -58.7 NC_004778.3 + 102886 1.06 0.001985
Target:  5'- gCGGCCGUGCGCACCACGCUAGCGAAAu -3'
miRNA:   3'- -GCCGGCACGCGUGGUGCGAUCGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 14788 0.74 0.294084
Target:  5'- gGGCCGUGCGCAa-ACGCUucGCGGc- -3'
miRNA:   3'- gCCGGCACGCGUggUGCGAu-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 91226 0.72 0.377174
Target:  5'- uGGCCGUGCGCAgCgACGaguacGCGAAAg -3'
miRNA:   3'- gCCGGCACGCGU-GgUGCgau--CGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 69795 0.72 0.377174
Target:  5'- gCGGCCGUGCcucGCgACCGCGUgucGCGAc- -3'
miRNA:   3'- -GCCGGCACG---CG-UGGUGCGau-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 36688 0.72 0.393885
Target:  5'- cCGGCCGUGgGCaacACCGCGCUcGCcAAGa -3'
miRNA:   3'- -GCCGGCACgCG---UGGUGCGAuCGcUUU- -5'
21201 5' -58.7 NC_004778.3 + 33666 0.72 0.393885
Target:  5'- gCGGCCG-GCGCgcuGCCGCGCggaUAGCGc-- -3'
miRNA:   3'- -GCCGGCaCGCG---UGGUGCG---AUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 47177 0.72 0.393885
Target:  5'- gGGCCGcgacaaaCGCACCACGCUGGaGGAGu -3'
miRNA:   3'- gCCGGCac-----GCGUGGUGCGAUCgCUUU- -5'
21201 5' -58.7 NC_004778.3 + 5096 0.72 0.411068
Target:  5'- cCGGuCUGUGCGCGaacgugcagcUCGCGCUGGcCGAAAu -3'
miRNA:   3'- -GCC-GGCACGCGU----------GGUGCGAUC-GCUUU- -5'
21201 5' -58.7 NC_004778.3 + 103420 0.72 0.411068
Target:  5'- -cGUCGUGC-CGCCAUGUUGGCGGAc -3'
miRNA:   3'- gcCGGCACGcGUGGUGCGAUCGCUUu -5'
21201 5' -58.7 NC_004778.3 + 90282 0.71 0.419833
Target:  5'- uGGUCGUGCGCACCGCGgUcGUa--- -3'
miRNA:   3'- gCCGGCACGCGUGGUGCgAuCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 67782 0.71 0.465285
Target:  5'- gCGGCUGgcccagcaUGCGCGCgGCGUUGGCGc-- -3'
miRNA:   3'- -GCCGGC--------ACGCGUGgUGCGAUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 72906 0.7 0.47468
Target:  5'- gCGG-CGUGuCGUgaGCCACGUUGGCGAu- -3'
miRNA:   3'- -GCCgGCAC-GCG--UGGUGCGAUCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 92735 0.7 0.49375
Target:  5'- cCGGCgGUGCGCGuCUugGCgAGCGc-- -3'
miRNA:   3'- -GCCGgCACGCGU-GGugCGaUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 48618 0.7 0.49375
Target:  5'- -uGCCGUGCGUACCAUaGCgacGCGAc- -3'
miRNA:   3'- gcCGGCACGCGUGGUG-CGau-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 120008 0.7 0.503416
Target:  5'- aCGGCCGUguccaacguGCGCGCCACGCcaaacuGCu--- -3'
miRNA:   3'- -GCCGGCA---------CGCGUGGUGCGau----CGcuuu -5'
21201 5' -58.7 NC_004778.3 + 110104 0.7 0.513164
Target:  5'- aCGG-CGUGCGCGCCgaGCGCUugGGCa--- -3'
miRNA:   3'- -GCCgGCACGCGUGG--UGCGA--UCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 64372 0.69 0.552866
Target:  5'- uCGGCCgGUGCGCACCuguaccaccccACGCUGuacuuGCGu-- -3'
miRNA:   3'- -GCCGG-CACGCGUGG-----------UGCGAU-----CGCuuu -5'
21201 5' -58.7 NC_004778.3 + 58255 0.69 0.552866
Target:  5'- uGGUCGUGUGCgcagaaugcucGCCGCGCUucaAGCGc-- -3'
miRNA:   3'- gCCGGCACGCG-----------UGGUGCGA---UCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 88367 0.69 0.552866
Target:  5'- uGGUgGUGUuggGCACCGCGCUGgacgcGCGAc- -3'
miRNA:   3'- gCCGgCACG---CGUGGUGCGAU-----CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 121433 0.69 0.562943
Target:  5'- uCGGCCGUGUcgccgccgucgGCGCCGCGCacaUAGUa--- -3'
miRNA:   3'- -GCCGGCACG-----------CGUGGUGCG---AUCGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.