miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21201 5' -58.7 NC_004778.3 + 69795 0.72 0.377174
Target:  5'- gCGGCCGUGCcucGCgACCGCGUgucGCGAc- -3'
miRNA:   3'- -GCCGGCACG---CG-UGGUGCGau-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 21496 0.68 0.613922
Target:  5'- gGGCCGgaugGCGcCGCCAcCGCcGGcCGAAAc -3'
miRNA:   3'- gCCGGCa---CGC-GUGGU-GCGaUC-GCUUU- -5'
21201 5' -58.7 NC_004778.3 + 38087 0.68 0.634461
Target:  5'- gCGGCgCGacGCGCAacagCACGCUAGCGc-- -3'
miRNA:   3'- -GCCG-GCa-CGCGUg---GUGCGAUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 61915 0.67 0.654993
Target:  5'- aCGGCCG-GCGaauuaAUgGCGUUGGCGGc- -3'
miRNA:   3'- -GCCGGCaCGCg----UGgUGCGAUCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 17095 0.67 0.675451
Target:  5'- aGGCCGUGuUGCugUGCGCgcGGCGc-- -3'
miRNA:   3'- gCCGGCAC-GCGugGUGCGa-UCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 125994 0.67 0.675451
Target:  5'- aGGCC--GCGCAUgACGCUGcGUGGGAg -3'
miRNA:   3'- gCCGGcaCGCGUGgUGCGAU-CGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 96583 0.67 0.675451
Target:  5'- gGGUCGUGgaGCACCcUGCUAGCc--- -3'
miRNA:   3'- gCCGGCACg-CGUGGuGCGAUCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 32907 0.66 0.715866
Target:  5'- aCGGCgCGUGCaCGCC-CGCagacGCGAAAc -3'
miRNA:   3'- -GCCG-GCACGcGUGGuGCGau--CGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 121637 0.66 0.755127
Target:  5'- uCGGCCGaGCGCACgUugGUUucGGgGAAGu -3'
miRNA:   3'- -GCCGGCaCGCGUG-GugCGA--UCgCUUU- -5'
21201 5' -58.7 NC_004778.3 + 114322 0.68 0.592416
Target:  5'- uGGCCGcGUGCGCCugcuCGCUuuuguugAGCGGu- -3'
miRNA:   3'- gCCGGCaCGCGUGGu---GCGA-------UCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 38349 0.69 0.573068
Target:  5'- cCGGUCGU-CGCG-CGCGCUAGCGc-- -3'
miRNA:   3'- -GCCGGCAcGCGUgGUGCGAUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 36688 0.72 0.393885
Target:  5'- cCGGCCGUGgGCaacACCGCGCUcGCcAAGa -3'
miRNA:   3'- -GCCGGCACgCG---UGGUGCGAuCGcUUU- -5'
21201 5' -58.7 NC_004778.3 + 5096 0.72 0.411068
Target:  5'- cCGGuCUGUGCGCGaacgugcagcUCGCGCUGGcCGAAAu -3'
miRNA:   3'- -GCC-GGCACGCGU----------GGUGCGAUC-GCUUU- -5'
21201 5' -58.7 NC_004778.3 + 103420 0.72 0.411068
Target:  5'- -cGUCGUGC-CGCCAUGUUGGCGGAc -3'
miRNA:   3'- gcCGGCACGcGUGGUGCGAUCGCUUu -5'
21201 5' -58.7 NC_004778.3 + 48618 0.7 0.49375
Target:  5'- -uGCCGUGCGUACCAUaGCgacGCGAc- -3'
miRNA:   3'- gcCGGCACGCGUGGUG-CGau-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 110104 0.7 0.513164
Target:  5'- aCGG-CGUGCGCGCCgaGCGCUugGGCa--- -3'
miRNA:   3'- -GCCgGCACGCGUGG--UGCGA--UCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 58255 0.69 0.552866
Target:  5'- uGGUCGUGUGCgcagaaugcucGCCGCGCUucaAGCGc-- -3'
miRNA:   3'- gCCGGCACGCG-----------UGGUGCGA---UCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 64372 0.69 0.552866
Target:  5'- uCGGCCgGUGCGCACCuguaccaccccACGCUGuacuuGCGu-- -3'
miRNA:   3'- -GCCGG-CACGCGUGG-----------UGCGAU-----CGCuuu -5'
21201 5' -58.7 NC_004778.3 + 121433 0.69 0.562943
Target:  5'- uCGGCCGUGUcgccgccgucgGCGCCGCGCacaUAGUa--- -3'
miRNA:   3'- -GCCGGCACG-----------CGUGGUGCG---AUCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 102886 1.06 0.001985
Target:  5'- gCGGCCGUGCGCACCACGCUAGCGAAAu -3'
miRNA:   3'- -GCCGGCACGCGUGGUGCGAUCGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.