miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21201 5' -58.7 NC_004778.3 + 5096 0.72 0.411068
Target:  5'- cCGGuCUGUGCGCGaacgugcagcUCGCGCUGGcCGAAAu -3'
miRNA:   3'- -GCC-GGCACGCGU----------GGUGCGAUC-GCUUU- -5'
21201 5' -58.7 NC_004778.3 + 5135 0.68 0.603669
Target:  5'- -cGCCGUGCccacgccgGCGCCGCGCUucAGCa--- -3'
miRNA:   3'- gcCGGCACG--------CGUGGUGCGA--UCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 7822 0.67 0.665235
Target:  5'- uCGGCCGacgGCGUggACCGCGCgcugcAGCaGAAc -3'
miRNA:   3'- -GCCGGCa--CGCG--UGGUGCGa----UCG-CUUu -5'
21201 5' -58.7 NC_004778.3 + 14788 0.74 0.294084
Target:  5'- gGGCCGUGCGCAa-ACGCUucGCGGc- -3'
miRNA:   3'- gCCGGCACGCGUggUGCGAu-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 15503 0.66 0.735678
Target:  5'- --aUCGUGCGCcauccGCCGCGCUcgcucuccgcgAGCGAGGa -3'
miRNA:   3'- gccGGCACGCG-----UGGUGCGA-----------UCGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 17045 0.66 0.734695
Target:  5'- aCGuGCCGccuaagcUGCGCgACCGCGCgcuuGCGGu- -3'
miRNA:   3'- -GC-CGGC-------ACGCG-UGGUGCGau--CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 17095 0.67 0.675451
Target:  5'- aGGCCGUGuUGCugUGCGCgcGGCGc-- -3'
miRNA:   3'- gCCGGCAC-GCGugGUGCGa-UCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 21496 0.68 0.613922
Target:  5'- gGGCCGgaugGCGcCGCCAcCGCcGGcCGAAAc -3'
miRNA:   3'- gCCGGCa---CGC-GUGGU-GCGaUC-GCUUU- -5'
21201 5' -58.7 NC_004778.3 + 32907 0.66 0.715866
Target:  5'- aCGGCgCGUGCaCGCC-CGCagacGCGAAAc -3'
miRNA:   3'- -GCCG-GCACGcGUGGuGCGau--CGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 33666 0.72 0.393885
Target:  5'- gCGGCCG-GCGCgcuGCCGCGCggaUAGCGc-- -3'
miRNA:   3'- -GCCGGCaCGCG---UGGUGCG---AUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 34189 0.68 0.593438
Target:  5'- gCGGUCGccgcgGCGCACCAUGCccgaguccgcGGCGAu- -3'
miRNA:   3'- -GCCGGCa----CGCGUGGUGCGa---------UCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 34440 0.68 0.613922
Target:  5'- -cGUCG-GCGCACgGCGCgcGCGGAAa -3'
miRNA:   3'- gcCGGCaCGCGUGgUGCGauCGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 36688 0.72 0.393885
Target:  5'- cCGGCCGUGgGCaacACCGCGCUcGCcAAGa -3'
miRNA:   3'- -GCCGGCACgCG---UGGUGCGAuCGcUUU- -5'
21201 5' -58.7 NC_004778.3 + 38087 0.68 0.634461
Target:  5'- gCGGCgCGacGCGCAacagCACGCUAGCGc-- -3'
miRNA:   3'- -GCCG-GCa-CGCGUg---GUGCGAUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 38349 0.69 0.573068
Target:  5'- cCGGUCGU-CGCG-CGCGCUAGCGc-- -3'
miRNA:   3'- -GCCGGCAcGCGUgGUGCGAUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 39556 0.68 0.634461
Target:  5'- -aGCCGcuUGCGCccACCACGCUgcacAGCGGc- -3'
miRNA:   3'- gcCGGC--ACGCG--UGGUGCGA----UCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 43305 0.67 0.67443
Target:  5'- aCGGcCCGUGCGCGuugaacuCgGCGCgcauGCGGAc -3'
miRNA:   3'- -GCC-GGCACGCGU-------GgUGCGau--CGCUUu -5'
21201 5' -58.7 NC_004778.3 + 47177 0.72 0.393885
Target:  5'- gGGCCGcgacaaaCGCACCACGCUGGaGGAGu -3'
miRNA:   3'- gCCGGCac-----GCGUGGUGCGAUCgCUUU- -5'
21201 5' -58.7 NC_004778.3 + 48618 0.7 0.49375
Target:  5'- -uGCCGUGCGUACCAUaGCgacGCGAc- -3'
miRNA:   3'- gcCGGCACGCGUGGUG-CGau-CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 52065 0.66 0.705847
Target:  5'- cCGGCgCGUGCGCAUugcaccagCGCGC-GGCGc-- -3'
miRNA:   3'- -GCCG-GCACGCGUG--------GUGCGaUCGCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.