miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21202 5' -56.2 NC_004778.3 + 3929 0.7 0.61009
Target:  5'- gGCCugGCGCUCGuuGUCGUuacGUAUGAc -3'
miRNA:   3'- -CGGugUGUGAGCggCGGCG---CAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 53134 0.7 0.61009
Target:  5'- cGCCACAgcaAC-CGCCGCCgGCGUuaguGCAAc -3'
miRNA:   3'- -CGGUGUg--UGaGCGGCGG-CGCA----UGUUu -5'
21202 5' -56.2 NC_004778.3 + 38108 0.7 0.61009
Target:  5'- cGCUAgCGCGCaCGCCGuCCGCGUccGCAGu -3'
miRNA:   3'- -CGGU-GUGUGaGCGGC-GGCGCA--UGUUu -5'
21202 5' -56.2 NC_004778.3 + 53676 0.7 0.620484
Target:  5'- uGCgCACAUGCUUGCCGCCaGCGc-CGAGg -3'
miRNA:   3'- -CG-GUGUGUGAGCGGCGG-CGCauGUUU- -5'
21202 5' -56.2 NC_004778.3 + 53044 0.7 0.620484
Target:  5'- cGCCACAgcaAC-CGCCGCCGCa-GCAAc -3'
miRNA:   3'- -CGGUGUg--UGaGCGGCGGCGcaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 95278 0.7 0.630887
Target:  5'- uGCUGCGCAgCUUGUCGCCGCcgGCGAc -3'
miRNA:   3'- -CGGUGUGU-GAGCGGCGGCGcaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 15509 0.7 0.641291
Target:  5'- cGCCAuccgcCGCGCUCGCUcuCCGCGaGCGAGg -3'
miRNA:   3'- -CGGU-----GUGUGAGCGGc-GGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 90558 0.7 0.651688
Target:  5'- aGUgGCAgCGCUCGCCGCCGaGcGCAGc -3'
miRNA:   3'- -CGgUGU-GUGAGCGGCGGCgCaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 53074 0.7 0.662069
Target:  5'- cGCCGCAgcaAC-CGCCGCCGCa-GCAAc -3'
miRNA:   3'- -CGGUGUg--UGaGCGGCGGCGcaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 128163 0.7 0.662069
Target:  5'- cGCCACAaacgUACaCGCCGCCGuCGUccccACAAGc -3'
miRNA:   3'- -CGGUGU----GUGaGCGGCGGC-GCA----UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 45453 0.69 0.672424
Target:  5'- uGCUaagGCGgaACUCGCUGCCGCGgucggGCAAc -3'
miRNA:   3'- -CGG---UGUg-UGAGCGGCGGCGCa----UGUUu -5'
21202 5' -56.2 NC_004778.3 + 68438 0.69 0.672424
Target:  5'- cGCCAC-CGC-CGCCGCCGCc------ -3'
miRNA:   3'- -CGGUGuGUGaGCGGCGGCGcauguuu -5'
21202 5' -56.2 NC_004778.3 + 33070 0.69 0.673458
Target:  5'- aGCCugGCGCaacggugcagcggccCGCUGCCGCGcUACAc- -3'
miRNA:   3'- -CGGugUGUGa--------------GCGGCGGCGC-AUGUuu -5'
21202 5' -56.2 NC_004778.3 + 17196 0.69 0.682746
Target:  5'- cGUCGCGUACUCGCaacCCGCGUGCu-- -3'
miRNA:   3'- -CGGUGUGUGAGCGgc-GGCGCAUGuuu -5'
21202 5' -56.2 NC_004778.3 + 119205 0.69 0.682746
Target:  5'- cGCUGCGCacuaaacaccuGCUCGCCGCCaauuGCGUuCAAu -3'
miRNA:   3'- -CGGUGUG-----------UGAGCGGCGG----CGCAuGUUu -5'
21202 5' -56.2 NC_004778.3 + 24679 0.69 0.693025
Target:  5'- -aCGCGCACUUGCCGCaCGC-UACc-- -3'
miRNA:   3'- cgGUGUGUGAGCGGCG-GCGcAUGuuu -5'
21202 5' -56.2 NC_004778.3 + 38212 0.69 0.693025
Target:  5'- uUCGCGUACUCGUCGCUGCGcACGGc -3'
miRNA:   3'- cGGUGUGUGAGCGGCGGCGCaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 49000 0.69 0.703251
Target:  5'- cGUgGCACAUUCGuuGCgCGCgGUGCGGc -3'
miRNA:   3'- -CGgUGUGUGAGCggCG-GCG-CAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 96000 0.69 0.703251
Target:  5'- gGCCGCGCuuuucgCGCCGCCGCa------ -3'
miRNA:   3'- -CGGUGUGuga---GCGGCGGCGcauguuu -5'
21202 5' -56.2 NC_004778.3 + 64864 0.69 0.713415
Target:  5'- cGCCACACauGCUCaCCGuuGCGgcauucUACAAAc -3'
miRNA:   3'- -CGGUGUG--UGAGcGGCggCGC------AUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.