miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21202 5' -56.2 NC_004778.3 + 101561 1.08 0.002477
Target:  5'- cGCCACACACUCGCCGCCGCGUACAAAc -3'
miRNA:   3'- -CGGUGUGUGAGCGGCGGCGCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 45616 0.79 0.209861
Target:  5'- aGCCGCGCcCUCGUCGCCGgCGUugAGu -3'
miRNA:   3'- -CGGUGUGuGAGCGGCGGC-GCAugUUu -5'
21202 5' -56.2 NC_004778.3 + 80114 0.78 0.255734
Target:  5'- uGCCGCACACguugugCGgCGCCGCGUcCAAu -3'
miRNA:   3'- -CGGUGUGUGa-----GCgGCGGCGCAuGUUu -5'
21202 5' -56.2 NC_004778.3 + 10736 0.78 0.255734
Target:  5'- cGCUGCGCGCUCcgcggGCUGCCGUGUGCGc- -3'
miRNA:   3'- -CGGUGUGUGAG-----CGGCGGCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 58175 0.77 0.281605
Target:  5'- cGCCGC-CGC-CGCCGCCGUGUcCGAAu -3'
miRNA:   3'- -CGGUGuGUGaGCGGCGGCGCAuGUUU- -5'
21202 5' -56.2 NC_004778.3 + 95619 0.75 0.379801
Target:  5'- --aGCGCGCagGCUGCCGCGUGCAc- -3'
miRNA:   3'- cggUGUGUGagCGGCGGCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 99981 0.73 0.450648
Target:  5'- cGCCACGCugUCGCCauaUUGCGUAUAc- -3'
miRNA:   3'- -CGGUGUGugAGCGGc--GGCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 32690 0.73 0.460007
Target:  5'- aGCUGCGCGuCUaCGCCGCUaGCGUAUAGAu -3'
miRNA:   3'- -CGGUGUGU-GA-GCGGCGG-CGCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 61288 0.73 0.460007
Target:  5'- cGCUACgauGCGC-CGUCGCCGaCGUGCGAGa -3'
miRNA:   3'- -CGGUG---UGUGaGCGGCGGC-GCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 26295 0.73 0.47903
Target:  5'- uGCCAUGCACccaccCGCCGCCGCacACGAGc -3'
miRNA:   3'- -CGGUGUGUGa----GCGGCGGCGcaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 77369 0.73 0.482881
Target:  5'- cGCCGCGCGCUggugcaaugcgcacgCGCCgGCCGCGUcGCu-- -3'
miRNA:   3'- -CGGUGUGUGA---------------GCGG-CGGCGCA-UGuuu -5'
21202 5' -56.2 NC_004778.3 + 25296 0.73 0.488684
Target:  5'- cGCaGCGCACuUCGUCGCCGCGUccCAAGu -3'
miRNA:   3'- -CGgUGUGUG-AGCGGCGGCGCAu-GUUU- -5'
21202 5' -56.2 NC_004778.3 + 58276 0.72 0.50826
Target:  5'- cGCCGCGCuucaagCGCUGCUGCGUguGCAAc -3'
miRNA:   3'- -CGGUGUGuga---GCGGCGGCGCA--UGUUu -5'
21202 5' -56.2 NC_004778.3 + 28698 0.72 0.50826
Target:  5'- gGCCAacaauaGCGCUCGCUGCaGCGcUGCAAGc -3'
miRNA:   3'- -CGGUg-----UGUGAGCGGCGgCGC-AUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 45324 0.72 0.528161
Target:  5'- uCCGCuguguGCGCUCGCCGCCgGUGUugAc- -3'
miRNA:   3'- cGGUG-----UGUGAGCGGCGG-CGCAugUuu -5'
21202 5' -56.2 NC_004778.3 + 68465 0.72 0.545299
Target:  5'- cGCCGC-CGC-CGCCGCCgGCGUugccgucguugucgGCAAAa -3'
miRNA:   3'- -CGGUGuGUGaGCGGCGG-CGCA--------------UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 20717 0.72 0.548342
Target:  5'- uGCCGCgACGCagCGCUGCCaCGUACAc- -3'
miRNA:   3'- -CGGUG-UGUGa-GCGGCGGcGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 25690 0.71 0.57904
Target:  5'- cGCUACAaucCGC-CGCCGUCGCGcACGAGg -3'
miRNA:   3'- -CGGUGU---GUGaGCGGCGGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 13394 0.71 0.58936
Target:  5'- gGCCGCACACaugCGCaCGCCGgaccaaucgaCGUGCGc- -3'
miRNA:   3'- -CGGUGUGUGa--GCG-GCGGC----------GCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 77001 0.71 0.58936
Target:  5'- aGCCACAUAUUCGCCaccuGCCGCa------ -3'
miRNA:   3'- -CGGUGUGUGAGCGG----CGGCGcauguuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.