miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21202 5' -56.2 NC_004778.3 + 2049 0.66 0.859837
Target:  5'- gGCCGC-CAC-CGCaGCCGCGUuccuCAu- -3'
miRNA:   3'- -CGGUGuGUGaGCGgCGGCGCAu---GUuu -5'
21202 5' -56.2 NC_004778.3 + 2362 0.67 0.818377
Target:  5'- -aCGCgaGCACUCGCCGg-GCGUGCAc- -3'
miRNA:   3'- cgGUG--UGUGAGCGGCggCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 2540 0.67 0.818377
Target:  5'- uCCAgCAUGCggCGCCGCCaGCaGUACAAc -3'
miRNA:   3'- cGGU-GUGUGa-GCGGCGG-CG-CAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 3929 0.7 0.61009
Target:  5'- gGCCugGCGCUCGuuGUCGUuacGUAUGAc -3'
miRNA:   3'- -CGGugUGUGAGCggCGGCG---CAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 4007 0.67 0.818377
Target:  5'- gGCCACGCA--CGUCGgCGCGUccucGCAAu -3'
miRNA:   3'- -CGGUGUGUgaGCGGCgGCGCA----UGUUu -5'
21202 5' -56.2 NC_004778.3 + 5140 0.66 0.859837
Target:  5'- uGCC-CACGC-CGgCGCCGCGcuuCAGc -3'
miRNA:   3'- -CGGuGUGUGaGCgGCGGCGCau-GUUu -5'
21202 5' -56.2 NC_004778.3 + 10675 0.66 0.858275
Target:  5'- cGCCGCgcccgaagcgugGCACguguugagugugCGCCGCCGCGc-CGAGg -3'
miRNA:   3'- -CGGUG------------UGUGa-----------GCGGCGGCGCauGUUU- -5'
21202 5' -56.2 NC_004778.3 + 10736 0.78 0.255734
Target:  5'- cGCUGCGCGCUCcgcggGCUGCCGUGUGCGc- -3'
miRNA:   3'- -CGGUGUGUGAG-----CGGCGGCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 12000 0.66 0.859837
Target:  5'- gGCCGC-UGCcgCGCCGCCGCuuaucACAAAc -3'
miRNA:   3'- -CGGUGuGUGa-GCGGCGGCGca---UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 13394 0.71 0.58936
Target:  5'- gGCCGCACACaugCGCaCGCCGgaccaaucgaCGUGCGc- -3'
miRNA:   3'- -CGGUGUGUGa--GCG-GCGGC----------GCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 15067 0.68 0.762969
Target:  5'- uGCUACGCAagggccggcCUCGcCCGCgGCGcGCAGGg -3'
miRNA:   3'- -CGGUGUGU---------GAGC-GGCGgCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 15509 0.7 0.641291
Target:  5'- cGCCAuccgcCGCGCUCGCUcuCCGCGaGCGAGg -3'
miRNA:   3'- -CGGU-----GUGUGAGCGGc-GGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 16136 0.68 0.74344
Target:  5'- cGCCACGCgaacaacuucgACUCGCUGUgCGaCGUGCGc- -3'
miRNA:   3'- -CGGUGUG-----------UGAGCGGCG-GC-GCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 17196 0.69 0.682746
Target:  5'- cGUCGCGUACUCGCaacCCGCGUGCu-- -3'
miRNA:   3'- -CGGUGUGUGAGCGgc-GGCGCAUGuuu -5'
21202 5' -56.2 NC_004778.3 + 19476 0.66 0.867519
Target:  5'- cGUCGCACguaAUggGCgCGCCGaCGUGCAAAu -3'
miRNA:   3'- -CGGUGUG---UGagCG-GCGGC-GCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 20717 0.72 0.548342
Target:  5'- uGCCGCgACGCagCGCUGCCaCGUACAc- -3'
miRNA:   3'- -CGGUG-UGUGa-GCGGCGGcGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 21014 0.66 0.851942
Target:  5'- cGCgGCGCACcagCGCguccaccugCGCCGCG-GCAAAa -3'
miRNA:   3'- -CGgUGUGUGa--GCG---------GCGGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 21265 0.67 0.800512
Target:  5'- -aCAUACAUUUGCCGCUGCaucugGCGAu -3'
miRNA:   3'- cgGUGUGUGAGCGGCGGCGca---UGUUu -5'
21202 5' -56.2 NC_004778.3 + 21833 0.66 0.851141
Target:  5'- uCCACGCGuaaaCGCCGCCgauuuucaagucgGCGUACAc- -3'
miRNA:   3'- cGGUGUGUga--GCGGCGG-------------CGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 24679 0.69 0.693025
Target:  5'- -aCGCGCACUUGCCGCaCGC-UACc-- -3'
miRNA:   3'- cgGUGUGUGAGCGGCG-GCGcAUGuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.