miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21202 5' -56.2 NC_004778.3 + 24679 0.69 0.693025
Target:  5'- -aCGCGCACUUGCCGCaCGC-UACc-- -3'
miRNA:   3'- cgGUGUGUGAGCGGCG-GCGcAUGuuu -5'
21202 5' -56.2 NC_004778.3 + 53134 0.7 0.61009
Target:  5'- cGCCACAgcaAC-CGCCGCCgGCGUuaguGCAAc -3'
miRNA:   3'- -CGGUGUg--UGaGCGGCGG-CGCA----UGUUu -5'
21202 5' -56.2 NC_004778.3 + 53044 0.7 0.620484
Target:  5'- cGCCACAgcaAC-CGCCGCCGCa-GCAAc -3'
miRNA:   3'- -CGGUGUg--UGaGCGGCGGCGcaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 90558 0.7 0.651688
Target:  5'- aGUgGCAgCGCUCGCCGCCGaGcGCAGc -3'
miRNA:   3'- -CGgUGU-GUGAGCGGCGGCgCaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 53074 0.7 0.662069
Target:  5'- cGCCGCAgcaAC-CGCCGCCGCa-GCAAc -3'
miRNA:   3'- -CGGUGUg--UGaGCGGCGGCGcaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 128163 0.7 0.662069
Target:  5'- cGCCACAaacgUACaCGCCGCCGuCGUccccACAAGc -3'
miRNA:   3'- -CGGUGU----GUGaGCGGCGGC-GCA----UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 45453 0.69 0.672424
Target:  5'- uGCUaagGCGgaACUCGCUGCCGCGgucggGCAAc -3'
miRNA:   3'- -CGG---UGUg-UGAGCGGCGGCGCa----UGUUu -5'
21202 5' -56.2 NC_004778.3 + 68438 0.69 0.672424
Target:  5'- cGCCAC-CGC-CGCCGCCGCc------ -3'
miRNA:   3'- -CGGUGuGUGaGCGGCGGCGcauguuu -5'
21202 5' -56.2 NC_004778.3 + 33070 0.69 0.673458
Target:  5'- aGCCugGCGCaacggugcagcggccCGCUGCCGCGcUACAc- -3'
miRNA:   3'- -CGGugUGUGa--------------GCGGCGGCGC-AUGUuu -5'
21202 5' -56.2 NC_004778.3 + 38108 0.7 0.61009
Target:  5'- cGCUAgCGCGCaCGCCGuCCGCGUccGCAGu -3'
miRNA:   3'- -CGGU-GUGUGaGCGGC-GGCGCA--UGUUu -5'
21202 5' -56.2 NC_004778.3 + 25690 0.71 0.57904
Target:  5'- cGCUACAaucCGC-CGCCGUCGCGcACGAGg -3'
miRNA:   3'- -CGGUGU---GUGaGCGGCGGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 68465 0.72 0.545299
Target:  5'- cGCCGC-CGC-CGCCGCCgGCGUugccgucguugucgGCAAAa -3'
miRNA:   3'- -CGGUGuGUGaGCGGCGG-CGCA--------------UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 10736 0.78 0.255734
Target:  5'- cGCUGCGCGCUCcgcggGCUGCCGUGUGCGc- -3'
miRNA:   3'- -CGGUGUGUGAG-----CGGCGGCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 58175 0.77 0.281605
Target:  5'- cGCCGC-CGC-CGCCGCCGUGUcCGAAu -3'
miRNA:   3'- -CGGUGuGUGaGCGGCGGCGCAuGUUU- -5'
21202 5' -56.2 NC_004778.3 + 32690 0.73 0.460007
Target:  5'- aGCUGCGCGuCUaCGCCGCUaGCGUAUAGAu -3'
miRNA:   3'- -CGGUGUGU-GA-GCGGCGG-CGCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 77369 0.73 0.482881
Target:  5'- cGCCGCGCGCUggugcaaugcgcacgCGCCgGCCGCGUcGCu-- -3'
miRNA:   3'- -CGGUGUGUGA---------------GCGG-CGGCGCA-UGuuu -5'
21202 5' -56.2 NC_004778.3 + 25296 0.73 0.488684
Target:  5'- cGCaGCGCACuUCGUCGCCGCGUccCAAGu -3'
miRNA:   3'- -CGgUGUGUG-AGCGGCGGCGCAu-GUUU- -5'
21202 5' -56.2 NC_004778.3 + 28698 0.72 0.50826
Target:  5'- gGCCAacaauaGCGCUCGCUGCaGCGcUGCAAGc -3'
miRNA:   3'- -CGGUg-----UGUGAGCGGCGgCGC-AUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 58276 0.72 0.50826
Target:  5'- cGCCGCGCuucaagCGCUGCUGCGUguGCAAc -3'
miRNA:   3'- -CGGUGUGuga---GCGGCGGCGCA--UGUUu -5'
21202 5' -56.2 NC_004778.3 + 45324 0.72 0.528161
Target:  5'- uCCGCuguguGCGCUCGCCGCCgGUGUugAc- -3'
miRNA:   3'- cGGUG-----UGUGAGCGGCGG-CGCAugUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.