miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21204 3' -52.2 NC_004778.3 + 118694 0.66 0.969409
Target:  5'- gGCGGCGCGcacacGGCagcccgcgGAGCGCgcAGCGAa -3'
miRNA:   3'- aUGUCGUGC-----CCGaa------UUUGCGa-UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 29336 0.66 0.969409
Target:  5'- cGCGGCGCGcGCUgggguGCGCcaAGCGGc -3'
miRNA:   3'- aUGUCGUGCcCGAauu--UGCGa-UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 23147 0.66 0.966165
Target:  5'- gGCuGCgGCGGGCacGGGCGCUGaCGAu -3'
miRNA:   3'- aUGuCG-UGCCCGaaUUUGCGAUcGCU- -5'
21204 3' -52.2 NC_004778.3 + 82461 0.66 0.966165
Target:  5'- cACaAGCGCGucGGCgUGAGCGCcGGCGc -3'
miRNA:   3'- aUG-UCGUGC--CCGaAUUUGCGaUCGCu -5'
21204 3' -52.2 NC_004778.3 + 120385 0.66 0.966165
Target:  5'- aUugAGC-CGGcGCUcGAGCGC-GGCGGu -3'
miRNA:   3'- -AugUCGuGCC-CGAaUUUGCGaUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 45431 0.66 0.966165
Target:  5'- uUGCuGGCGCGGcGCUUAucagUGCUaaGGCGGa -3'
miRNA:   3'- -AUG-UCGUGCC-CGAAUuu--GCGA--UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 94795 0.66 0.966165
Target:  5'- cUGCGGCcCGGGCUcGGACGCa----- -3'
miRNA:   3'- -AUGUCGuGCCCGAaUUUGCGaucgcu -5'
21204 3' -52.2 NC_004778.3 + 70235 0.66 0.964801
Target:  5'- gACAGCACGGGCgucaaaaaGUgGGCa- -3'
miRNA:   3'- aUGUCGUGCCCGaauuug--CGaUCGcu -5'
21204 3' -52.2 NC_004778.3 + 101660 0.66 0.962685
Target:  5'- gUGCAGCGCGGGCaggUUGAugaaguuguCGCUcGCc- -3'
miRNA:   3'- -AUGUCGUGCCCG---AAUUu--------GCGAuCGcu -5'
21204 3' -52.2 NC_004778.3 + 22416 0.66 0.962685
Target:  5'- aGCGGUACGGGC----GCGUcGGCa- -3'
miRNA:   3'- aUGUCGUGCCCGaauuUGCGaUCGcu -5'
21204 3' -52.2 NC_004778.3 + 28705 0.66 0.962685
Target:  5'- aAUAGCGCucGCUgcAGCGCUgcaAGCGAu -3'
miRNA:   3'- aUGUCGUGccCGAauUUGCGA---UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 86308 0.66 0.962685
Target:  5'- gUGCGGCGCGccgcGGCgccgucgAAGCGCUuGCGc -3'
miRNA:   3'- -AUGUCGUGC----CCGaa-----UUUGCGAuCGCu -5'
21204 3' -52.2 NC_004778.3 + 106931 0.66 0.958965
Target:  5'- gGCGGCcuCGGGCaaauauggcAAACGCgucGGCGAa -3'
miRNA:   3'- aUGUCGu-GCCCGaa-------UUUGCGa--UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 14379 0.66 0.958965
Target:  5'- aGCAGCccucaucgACGGGC--AGGCGUUGGgGGa -3'
miRNA:   3'- aUGUCG--------UGCCCGaaUUUGCGAUCgCU- -5'
21204 3' -52.2 NC_004778.3 + 36822 0.66 0.958965
Target:  5'- aACGGCACGGGUuauuuuaguUUAGGCcacuugGGCGAc -3'
miRNA:   3'- aUGUCGUGCCCG---------AAUUUGcga---UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 37828 0.67 0.950777
Target:  5'- aACAGCGCGcGGCgac-ACGCgUGGUGc -3'
miRNA:   3'- aUGUCGUGC-CCGaauuUGCG-AUCGCu -5'
21204 3' -52.2 NC_004778.3 + 22880 0.67 0.941564
Target:  5'- --aGGCACGGGCc----CGCU-GCGAa -3'
miRNA:   3'- augUCGUGCCCGaauuuGCGAuCGCU- -5'
21204 3' -52.2 NC_004778.3 + 61006 0.67 0.941564
Target:  5'- gGCGGCgGCGgcGGCgguGGCGCUuaGGCGAa -3'
miRNA:   3'- aUGUCG-UGC--CCGaauUUGCGA--UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 91140 0.67 0.936565
Target:  5'- -uCGGCGCGcGGUcgcgUGcGCGCUGGCGc -3'
miRNA:   3'- auGUCGUGC-CCGa---AUuUGCGAUCGCu -5'
21204 3' -52.2 NC_004778.3 + 98881 0.67 0.936565
Target:  5'- cGCGGCacGCGGGCUUu--CGa-AGCGAc -3'
miRNA:   3'- aUGUCG--UGCCCGAAuuuGCgaUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.