miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21204 3' -52.2 NC_004778.3 + 121401 0.7 0.847939
Target:  5'- cGCGGCgAUGGGUgc--ACGCUAGCa- -3'
miRNA:   3'- aUGUCG-UGCCCGaauuUGCGAUCGcu -5'
21204 3' -52.2 NC_004778.3 + 120385 0.66 0.966165
Target:  5'- aUugAGC-CGGcGCUcGAGCGC-GGCGGu -3'
miRNA:   3'- -AugUCGuGCC-CGAaUUUGCGaUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 118694 0.66 0.969409
Target:  5'- gGCGGCGCGcacacGGCagcccgcgGAGCGCgcAGCGAa -3'
miRNA:   3'- aUGUCGUGC-----CCGaa------UUUGCGa-UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 116135 0.68 0.919978
Target:  5'- cGCAGauacacaaaaACGGGCaccugcccgugUUGGauGCGCUGGCGAg -3'
miRNA:   3'- aUGUCg---------UGCCCG-----------AAUU--UGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 108420 0.69 0.879719
Target:  5'- cGCGGCGCaGGUggAcGCGCUGGUGc -3'
miRNA:   3'- aUGUCGUGcCCGaaUuUGCGAUCGCu -5'
21204 3' -52.2 NC_004778.3 + 106931 0.66 0.958965
Target:  5'- gGCGGCcuCGGGCaaauauggcAAACGCgucGGCGAa -3'
miRNA:   3'- aUGUCGu-GCCCGaa-------UUUGCGa--UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 102884 0.68 0.907595
Target:  5'- aUGCGGC-CGuGCgcaccACGCUAGCGAa -3'
miRNA:   3'- -AUGUCGuGCcCGaauu-UGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 101660 0.66 0.962685
Target:  5'- gUGCAGCGCGGGCaggUUGAugaaguuguCGCUcGCc- -3'
miRNA:   3'- -AUGUCGUGCCCG---AAUUu--------GCGAuCGcu -5'
21204 3' -52.2 NC_004778.3 + 98881 0.67 0.936565
Target:  5'- cGCGGCacGCGGGCUUu--CGa-AGCGAc -3'
miRNA:   3'- aUGUCG--UGCCCGAAuuuGCgaUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 98428 1.08 0.005324
Target:  5'- gUACAGCACGGGCUUAAACGCUAGCGAg -3'
miRNA:   3'- -AUGUCGUGCCCGAAUUUGCGAUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 96422 0.71 0.774526
Target:  5'- cGCGGCAaGGGUgcugGAACGC-GGCGAu -3'
miRNA:   3'- aUGUCGUgCCCGaa--UUUGCGaUCGCU- -5'
21204 3' -52.2 NC_004778.3 + 95019 0.71 0.774526
Target:  5'- aGCAGUACGGGCacgccGCGCUGcCGGa -3'
miRNA:   3'- aUGUCGUGCCCGaauu-UGCGAUcGCU- -5'
21204 3' -52.2 NC_004778.3 + 94935 0.68 0.901009
Target:  5'- aGCAGCACGcGGU---AGCGCgagucGGCGGc -3'
miRNA:   3'- aUGUCGUGC-CCGaauUUGCGa----UCGCU- -5'
21204 3' -52.2 NC_004778.3 + 94795 0.66 0.966165
Target:  5'- cUGCGGCcCGGGCUcGGACGCa----- -3'
miRNA:   3'- -AUGUCGuGCCCGAaUUUGCGaucgcu -5'
21204 3' -52.2 NC_004778.3 + 94733 0.75 0.584621
Target:  5'- -cCAGCACGGGCgucuGGCuGCUGGcCGAg -3'
miRNA:   3'- auGUCGUGCCCGaau-UUG-CGAUC-GCU- -5'
21204 3' -52.2 NC_004778.3 + 91303 0.68 0.925773
Target:  5'- aGCGGCgcaGCGGGCcu--GCGCUucacuGCGGa -3'
miRNA:   3'- aUGUCG---UGCCCGaauuUGCGAu----CGCU- -5'
21204 3' -52.2 NC_004778.3 + 91140 0.67 0.936565
Target:  5'- -uCGGCGCGcGGUcgcgUGcGCGCUGGCGc -3'
miRNA:   3'- auGUCGUGC-CCGa---AUuUGCGAUCGCu -5'
21204 3' -52.2 NC_004778.3 + 86308 0.66 0.962685
Target:  5'- gUGCGGCGCGccgcGGCgccgucgAAGCGCUuGCGc -3'
miRNA:   3'- -AUGUCGUGC----CCGaa-----UUUGCGAuCGCu -5'
21204 3' -52.2 NC_004778.3 + 82461 0.66 0.966165
Target:  5'- cACaAGCGCGucGGCgUGAGCGCcGGCGc -3'
miRNA:   3'- aUG-UCGUGC--CCGaAUUUGCGaUCGCu -5'
21204 3' -52.2 NC_004778.3 + 70235 0.66 0.964801
Target:  5'- gACAGCACGGGCgucaaaaaGUgGGCa- -3'
miRNA:   3'- aUGUCGUGCCCGaauuug--CGaUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.