Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21204 | 3' | -52.2 | NC_004778.3 | + | 82461 | 0.66 | 0.966165 |
Target: 5'- cACaAGCGCGucGGCgUGAGCGCcGGCGc -3' miRNA: 3'- aUG-UCGUGC--CCGaAUUUGCGaUCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 52853 | 0.7 | 0.839431 |
Target: 5'- aGCAGCgaaaauGCGGaggccauucaGCUUGAgauagacgcGCGCUAGCGAa -3' miRNA: 3'- aUGUCG------UGCC----------CGAAUU---------UGCGAUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 96422 | 0.71 | 0.774526 |
Target: 5'- cGCGGCAaGGGUgcugGAACGC-GGCGAu -3' miRNA: 3'- aUGUCGUgCCCGaa--UUUGCGaUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 98428 | 1.08 | 0.005324 |
Target: 5'- gUACAGCACGGGCUUAAACGCUAGCGAg -3' miRNA: 3'- -AUGUCGUGCCCGAAUUUGCGAUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 36822 | 0.66 | 0.958965 |
Target: 5'- aACGGCACGGGUuauuuuaguUUAGGCcacuugGGCGAc -3' miRNA: 3'- aUGUCGUGCCCG---------AAUUUGcga---UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 14379 | 0.66 | 0.958965 |
Target: 5'- aGCAGCccucaucgACGGGC--AGGCGUUGGgGGa -3' miRNA: 3'- aUGUCG--------UGCCCGaaUUUGCGAUCgCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 91140 | 0.67 | 0.936565 |
Target: 5'- -uCGGCGCGcGGUcgcgUGcGCGCUGGCGc -3' miRNA: 3'- auGUCGUGC-CCGa---AUuUGCGAUCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 91303 | 0.68 | 0.925773 |
Target: 5'- aGCGGCgcaGCGGGCcu--GCGCUucacuGCGGa -3' miRNA: 3'- aUGUCG---UGCCCGaauuUGCGAu----CGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 118694 | 0.66 | 0.969409 |
Target: 5'- gGCGGCGCGcacacGGCagcccgcgGAGCGCgcAGCGAa -3' miRNA: 3'- aUGUCGUGC-----CCGaa------UUUGCGa-UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 121401 | 0.7 | 0.847939 |
Target: 5'- cGCGGCgAUGGGUgc--ACGCUAGCa- -3' miRNA: 3'- aUGUCG-UGCCCGaauuUGCGAUCGcu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 14028 | 0.68 | 0.913918 |
Target: 5'- gGCAGCACucuuuGGGCUUuaaaaagcGAGCGUcGGUGGa -3' miRNA: 3'- aUGUCGUG-----CCCGAA--------UUUGCGaUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 67793 | 0.68 | 0.913918 |
Target: 5'- aGCAuGCGCGcGGCgUUGGcgcGCGCUGGCu- -3' miRNA: 3'- aUGU-CGUGC-CCG-AAUU---UGCGAUCGcu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 23147 | 0.66 | 0.966165 |
Target: 5'- gGCuGCgGCGGGCacGGGCGCUGaCGAu -3' miRNA: 3'- aUGuCG-UGCCCGaaUUUGCGAUcGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 102884 | 0.68 | 0.907595 |
Target: 5'- aUGCGGC-CGuGCgcaccACGCUAGCGAa -3' miRNA: 3'- -AUGUCGuGCcCGaauu-UGCGAUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 86308 | 0.66 | 0.962685 |
Target: 5'- gUGCGGCGCGccgcGGCgccgucgAAGCGCUuGCGc -3' miRNA: 3'- -AUGUCGUGC----CCGaa-----UUUGCGAuCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 116135 | 0.68 | 0.919978 |
Target: 5'- cGCAGauacacaaaaACGGGCaccugcccgugUUGGauGCGCUGGCGAg -3' miRNA: 3'- aUGUCg---------UGCCCG-----------AAUU--UGCGAUCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 94935 | 0.68 | 0.901009 |
Target: 5'- aGCAGCACGcGGU---AGCGCgagucGGCGGc -3' miRNA: 3'- aUGUCGUGC-CCGaauUUGCGa----UCGCU- -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 69017 | 0.7 | 0.839431 |
Target: 5'- aGCAGCACGaucGGCcugAAGCGCaAGCGc -3' miRNA: 3'- aUGUCGUGC---CCGaa-UUUGCGaUCGCu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 101660 | 0.66 | 0.962685 |
Target: 5'- gUGCAGCGCGGGCaggUUGAugaaguuguCGCUcGCc- -3' miRNA: 3'- -AUGUCGUGCCCG---AAUUu--------GCGAuCGcu -5' |
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21204 | 3' | -52.2 | NC_004778.3 | + | 61006 | 0.67 | 0.941564 |
Target: 5'- gGCGGCgGCGgcGGCgguGGCGCUuaGGCGAa -3' miRNA: 3'- aUGUCG-UGC--CCGaauUUGCGA--UCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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