miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 41208 0.71 0.579705
Target:  5'- cCGU-CGCACGUgguuucgcguuUGACggGCGGCCGCGCc -3'
miRNA:   3'- -GCAuGUGUGCA-----------GCUG--CGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 30806 0.71 0.598905
Target:  5'- uGUACGCuACGgggcagcUCGAC-CGGCCGCugGa -3'
miRNA:   3'- gCAUGUG-UGC-------AGCUGcGCCGGCGugU- -5'
21206 3' -56.9 NC_004778.3 + 116031 0.71 0.599919
Target:  5'- -aUGCGCACGUCGAUuggucCGGCgUGCGCAu -3'
miRNA:   3'- gcAUGUGUGCAGCUGc----GCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 100840 0.71 0.610065
Target:  5'- ---cCGCACGUCGACGCca-CGCGCAa -3'
miRNA:   3'- gcauGUGUGCAGCUGCGccgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 83270 0.71 0.610065
Target:  5'- --gACGCGCGgaaCGGCGCGGCggcucCGCGCu -3'
miRNA:   3'- gcaUGUGUGCa--GCUGCGCCG-----GCGUGu -5'
21206 3' -56.9 NC_004778.3 + 86808 0.7 0.630397
Target:  5'- uCGUGCAC-CGUCGGCGgCGGaaCGCAa- -3'
miRNA:   3'- -GCAUGUGuGCAGCUGC-GCCg-GCGUgu -5'
21206 3' -56.9 NC_004778.3 + 67799 0.7 0.630397
Target:  5'- --cGCGCgGCGUUGGCGCgcgcuGGCUGCGCGg -3'
miRNA:   3'- gcaUGUG-UGCAGCUGCG-----CCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 52043 0.7 0.650735
Target:  5'- --aACACAaucacaagCGACGCGGCCgGCGCGu -3'
miRNA:   3'- gcaUGUGUgca-----GCUGCGCCGG-CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 51132 0.7 0.650735
Target:  5'- uCGUACACGCcggCG-CGCGGCUgaaGCACu -3'
miRNA:   3'- -GCAUGUGUGca-GCuGCGCCGG---CGUGu -5'
21206 3' -56.9 NC_004778.3 + 113979 0.7 0.660886
Target:  5'- gCGgcaGCACuUUGGCGUGGUCGCGCGg -3'
miRNA:   3'- -GCaugUGUGcAGCUGCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 60474 0.7 0.660886
Target:  5'- aCGUugAgGuCGUCGACGCucagcuGCCGCGCc -3'
miRNA:   3'- -GCAugUgU-GCAGCUGCGc-----CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 120998 0.7 0.675057
Target:  5'- gGUAUugcuccaacgACAUGUCGGCgucaauuugcucuauGCGGCCGCAUu -3'
miRNA:   3'- gCAUG----------UGUGCAGCUG---------------CGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 81465 0.69 0.678086
Target:  5'- gCGUGCGCGCGUacUGGCGCGugcuuucgaacaaaGCgGCGCu -3'
miRNA:   3'- -GCAUGUGUGCA--GCUGCGC--------------CGgCGUGu -5'
21206 3' -56.9 NC_004778.3 + 55679 0.69 0.688156
Target:  5'- uGUugGCGCGacuaauguuguuugUCGA-GCGGCUGUACAc -3'
miRNA:   3'- gCAugUGUGC--------------AGCUgCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 16302 0.69 0.691169
Target:  5'- aCGUgccgGCAgGCGUCGGCGUGauaaCUGCGCAg -3'
miRNA:   3'- -GCA----UGUgUGCAGCUGCGCc---GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34428 0.69 0.691169
Target:  5'- --gGCGCAccugccCGUCGGCGCacGGCgCGCGCGg -3'
miRNA:   3'- gcaUGUGU------GCAGCUGCG--CCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 107597 0.69 0.701177
Target:  5'- aCGUACGCACGgucagugacaUUGACGCG--CGCGCAa -3'
miRNA:   3'- -GCAUGUGUGC----------AGCUGCGCcgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56931 0.69 0.708149
Target:  5'- gCGUcCGCGuCGUCGACGCucaacgccaccgacGGCgGCACu -3'
miRNA:   3'- -GCAuGUGU-GCAGCUGCG--------------CCGgCGUGu -5'
21206 3' -56.9 NC_004778.3 + 38778 0.69 0.711128
Target:  5'- aGUACGCAgCGUCGAcCGCgcugacguugacGGCgUGCGCAa -3'
miRNA:   3'- gCAUGUGU-GCAGCU-GCG------------CCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 9405 0.69 0.718055
Target:  5'- --cACGCGCGcaaacugcagcaguUUGGCGUGGCgCGCACGu -3'
miRNA:   3'- gcaUGUGUGC--------------AGCUGCGCCG-GCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.