miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 3' -54.7 NC_004778.3 + 95244 1.11 0.002123
Target:  5'- cGCAAGCGGCACAACAGCCACAGCACGu -3'
miRNA:   3'- -CGUUCGCCGUGUUGUCGGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 96753 0.82 0.186776
Target:  5'- cGCuAGCGGCguagacgcGCAGCuGCCGCGGCGCGu -3'
miRNA:   3'- -CGuUCGCCG--------UGUUGuCGGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 60981 0.78 0.314105
Target:  5'- cGCcGGCGGCgGCGGCGGCgGCGGCGgCGg -3'
miRNA:   3'- -CGuUCGCCG-UGUUGUCGgUGUCGU-GC- -5'
21208 3' -54.7 NC_004778.3 + 38083 0.78 0.32157
Target:  5'- cGCu-GCGGCGCGACGcGCaACAGCACGc -3'
miRNA:   3'- -CGuuCGCCGUGUUGU-CGgUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 96599 0.77 0.329166
Target:  5'- uGCuAGCcaGCGCGGCGGCCGCuAGCGCGa -3'
miRNA:   3'- -CGuUCGc-CGUGUUGUCGGUG-UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 91300 0.75 0.421259
Target:  5'- uCGAGCGGCGCAGCGGgCCugcgcuucacuGCGGaCGCGg -3'
miRNA:   3'- cGUUCGCCGUGUUGUC-GG-----------UGUC-GUGC- -5'
21208 3' -54.7 NC_004778.3 + 64121 0.75 0.430373
Target:  5'- aGCAguuuAGCGGCgcccaaGCAACGGUCACucAGCGCGu -3'
miRNA:   3'- -CGU----UCGCCG------UGUUGUCGGUG--UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 117811 0.75 0.439601
Target:  5'- cGCAAGCGGCGCAcCAGCgACG--ACGa -3'
miRNA:   3'- -CGUUCGCCGUGUuGUCGgUGUcgUGC- -5'
21208 3' -54.7 NC_004778.3 + 121404 0.75 0.439601
Target:  5'- gGCAcguGCGGCugAGCAGCa--GGCACGc -3'
miRNA:   3'- -CGUu--CGCCGugUUGUCGgugUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 112386 0.75 0.448942
Target:  5'- cGCAAGC-GCGCGgucgcGCAGCUuagGCGGCACGu -3'
miRNA:   3'- -CGUUCGcCGUGU-----UGUCGG---UGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 127044 0.74 0.467945
Target:  5'- uCGGGCgcgGGCACGuCGGCCACcGCGCGg -3'
miRNA:   3'- cGUUCG---CCGUGUuGUCGGUGuCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 122071 0.74 0.467945
Target:  5'- aCAAGCGGUAC-GCGGUCGacCGGCACGc -3'
miRNA:   3'- cGUUCGCCGUGuUGUCGGU--GUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 43123 0.74 0.467945
Target:  5'- cGCAAGCGcuuCGACGgcGCCGCGGCGCGc -3'
miRNA:   3'- -CGUUCGCcguGUUGU--CGGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 76635 0.74 0.467945
Target:  5'- aGCGGGCGGcCGgAACGGCCGCucgguaauuGGCGCc -3'
miRNA:   3'- -CGUUCGCC-GUgUUGUCGGUG---------UCGUGc -5'
21208 3' -54.7 NC_004778.3 + 41853 0.74 0.48149
Target:  5'- gGCucGCGGCGCAACccgucguaauggaaaGGCCAUcuAGCACa -3'
miRNA:   3'- -CGuuCGCCGUGUUG---------------UCGGUG--UCGUGc -5'
21208 3' -54.7 NC_004778.3 + 44121 0.74 0.487353
Target:  5'- cGCGGGCGuuuGCGGCGGCgACGGCAUGg -3'
miRNA:   3'- -CGUUCGCcg-UGUUGUCGgUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 44151 0.74 0.487353
Target:  5'- cGCGGGCGuuuGCGGCGGCgACGGCAUGg -3'
miRNA:   3'- -CGUUCGCcg-UGUUGUCGgUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 69897 0.74 0.511131
Target:  5'- uGCaAAGCGGCcCAGCGGaccgguaugaaucuaCCGCGGCACa -3'
miRNA:   3'- -CG-UUCGCCGuGUUGUC---------------GGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 59472 0.74 0.517151
Target:  5'- gGCGGGCGcGCGCAuuCGGUaccuaGCAGCGCGc -3'
miRNA:   3'- -CGUUCGC-CGUGUu-GUCGg----UGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 107865 0.74 0.517151
Target:  5'- -uGAGCGGCugGGCcaucuuGCCGCAaaGCACGu -3'
miRNA:   3'- cgUUCGCCGugUUGu-----CGGUGU--CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.