miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 3' -54.7 NC_004778.3 + 139 0.71 0.641664
Target:  5'- ---uGCGGCGCGuccGCGGCgUACAGCGCc -3'
miRNA:   3'- cguuCGCCGUGU---UGUCG-GUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 290 0.67 0.869879
Target:  5'- ---uGCGGCACGuaaucGCAGucccaCCugAGCGCGu -3'
miRNA:   3'- cguuCGCCGUGU-----UGUC-----GGugUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 1654 0.67 0.866824
Target:  5'- aGCGAcGCgucguuGGCACcuucgguuuggguGCGGCCAgCAGCGCGa -3'
miRNA:   3'- -CGUU-CG------CCGUGu------------UGUCGGU-GUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 1979 0.68 0.846116
Target:  5'- ---cGCGuGCACAGCucguGCCgcuGCGGCGCa -3'
miRNA:   3'- cguuCGC-CGUGUUGu---CGG---UGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 2375 0.71 0.673153
Target:  5'- cCGGGCGuGCACGACGGCaCGCucgAGUACu -3'
miRNA:   3'- cGUUCGC-CGUGUUGUCG-GUG---UCGUGc -5'
21208 3' -54.7 NC_004778.3 + 2543 0.68 0.820507
Target:  5'- aGCAuGCGGCGCc---GCCAgCAGUACa -3'
miRNA:   3'- -CGUuCGCCGUGuuguCGGU-GUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 4967 0.67 0.862175
Target:  5'- uGCGuGCGcCGCGACAuuGCCAC-GCGCGu -3'
miRNA:   3'- -CGUuCGCcGUGUUGU--CGGUGuCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 6218 0.67 0.857447
Target:  5'- uGCuuuGCGGUaaACAGCuGCUuggauucggccuuuuGCAGCGCGg -3'
miRNA:   3'- -CGuu-CGCCG--UGUUGuCGG---------------UGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 7156 0.67 0.854252
Target:  5'- gGCGGGCGGCGC----GCCG-AGCACu -3'
miRNA:   3'- -CGUUCGCCGUGuuguCGGUgUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 7690 0.66 0.907449
Target:  5'- gGCAucAGCGaccCGCAAaucgggucgcuaaacCAGCUACGGCGCGc -3'
miRNA:   3'- -CGU--UCGCc--GUGUU---------------GUCGGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 8000 0.7 0.744932
Target:  5'- uGUgcGCGGCGcCGACGGCgGCGaCACGg -3'
miRNA:   3'- -CGuuCGCCGU-GUUGUCGgUGUcGUGC- -5'
21208 3' -54.7 NC_004778.3 + 8464 0.69 0.774328
Target:  5'- -aAGGCGGCgccgggGCAGCGGgCGCGGCccGCGc -3'
miRNA:   3'- cgUUCGCCG------UGUUGUCgGUGUCG--UGC- -5'
21208 3' -54.7 NC_004778.3 + 8780 0.7 0.734911
Target:  5'- aCAuuUGGCGCAGCAGCUuCAGCgGCGa -3'
miRNA:   3'- cGUucGCCGUGUUGUCGGuGUCG-UGC- -5'
21208 3' -54.7 NC_004778.3 + 9429 0.66 0.898384
Target:  5'- gGCGuGGCGcGCACGuuggacACGGCCgucgucucgGCGGCGCa -3'
miRNA:   3'- -CGU-UCGC-CGUGU------UGUCGG---------UGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 10225 0.69 0.774328
Target:  5'- cGCAauuGGCGGCgaGCAGguGUuuagugCGCAGCGCGc -3'
miRNA:   3'- -CGU---UCGCCG--UGUUguCG------GUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 10507 0.68 0.820507
Target:  5'- gGUAAGCGGauaugaaaACAGCAGaCCGauUAGCAUGc -3'
miRNA:   3'- -CGUUCGCCg-------UGUUGUC-GGU--GUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 12767 0.67 0.880284
Target:  5'- aCAAGCGGUugacagACAgaaugcugagaaugcGCAGUUugGGCGCGu -3'
miRNA:   3'- cGUUCGCCG------UGU---------------UGUCGGugUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 14285 0.67 0.869119
Target:  5'- cGCGAagucaacGUGGCcacCAACAcguuucGCCGCAGCugGg -3'
miRNA:   3'- -CGUU-------CGCCGu--GUUGU------CGGUGUCGugC- -5'
21208 3' -54.7 NC_004778.3 + 15072 0.67 0.862175
Target:  5'- cGCAAG-GGC-CGGCcucGcCCGCGGCGCGc -3'
miRNA:   3'- -CGUUCgCCGuGUUGu--C-GGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 15122 0.73 0.546625
Target:  5'- aGCGAGCaGGCGCAcGCGGCCAuuaucaaacgcauCGGuCGCGg -3'
miRNA:   3'- -CGUUCG-CCGUGU-UGUCGGU-------------GUC-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.