miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 3' -54.7 NC_004778.3 + 32450 0.7 0.693984
Target:  5'- aGCAuGCGGCGCAGCcGCUGCGugucgccuuuGCACc -3'
miRNA:   3'- -CGUuCGCCGUGUUGuCGGUGU----------CGUGc -5'
21208 3' -54.7 NC_004778.3 + 33442 0.73 0.547652
Target:  5'- uGC-GGCGGCGCGaaaagcGCGGCCGuCcGCACGg -3'
miRNA:   3'- -CGuUCGCCGUGU------UGUCGGU-GuCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 37972 0.73 0.568298
Target:  5'- cGCAgccguAGCGGCGCGucaGCAGUCAU-GCACa -3'
miRNA:   3'- -CGU-----UCGCCGUGU---UGUCGGUGuCGUGc -5'
21208 3' -54.7 NC_004778.3 + 61622 0.72 0.620617
Target:  5'- uGCAAGCguuuGGCGCcgcGCAGCCAgcGCGCGc -3'
miRNA:   3'- -CGUUCG----CCGUGu--UGUCGGUguCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 25664 0.72 0.63114
Target:  5'- gGCcGGCGGCGUGugGGUCaACGGCACGc -3'
miRNA:   3'- -CGuUCGCCGUGUugUCGG-UGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 73526 0.71 0.650078
Target:  5'- cGCAauucGGCGGCGCAGCAGCUuuuauuggaaucCGGCuACa -3'
miRNA:   3'- -CGU----UCGCCGUGUUGUCGGu-----------GUCG-UGc -5'
21208 3' -54.7 NC_004778.3 + 22578 0.71 0.652181
Target:  5'- uGCAugGGCGGCACAAaguGgCGCGGCAa- -3'
miRNA:   3'- -CGU--UCGCCGUGUUgu-CgGUGUCGUgc -5'
21208 3' -54.7 NC_004778.3 + 118746 0.71 0.661631
Target:  5'- gGCGcGGCGGCGCAcaccaacACGuGCCACgcuucgGGCGCGg -3'
miRNA:   3'- -CGU-UCGCCGUGU-------UGU-CGGUG------UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 26311 0.7 0.693984
Target:  5'- aGCAGcGCGGCuaaaacACAGCuGCCGCgcaaAGCGCa -3'
miRNA:   3'- -CGUU-CGCCG------UGUUGuCGGUG----UCGUGc -5'
21208 3' -54.7 NC_004778.3 + 114395 0.73 0.537416
Target:  5'- aGCAacGGcCGGCuuguCAGCAGCCGCGGUcCGu -3'
miRNA:   3'- -CGU--UC-GCCGu---GUUGUCGGUGUCGuGC- -5'
21208 3' -54.7 NC_004778.3 + 107865 0.74 0.517151
Target:  5'- -uGAGCGGCugGGCcaucuuGCCGCAaaGCACGu -3'
miRNA:   3'- cgUUCGCCGugUUGu-----CGGUGU--CGUGC- -5'
21208 3' -54.7 NC_004778.3 + 69897 0.74 0.511131
Target:  5'- uGCaAAGCGGCcCAGCGGaccgguaugaaucuaCCGCGGCACa -3'
miRNA:   3'- -CG-UUCGCCGuGUUGUC---------------GGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 96599 0.77 0.329166
Target:  5'- uGCuAGCcaGCGCGGCGGCCGCuAGCGCGa -3'
miRNA:   3'- -CGuUCGc-CGUGUUGUCGGUG-UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 64121 0.75 0.430373
Target:  5'- aGCAguuuAGCGGCgcccaaGCAACGGUCACucAGCGCGu -3'
miRNA:   3'- -CGU----UCGCCG------UGUUGUCGGUG--UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 121404 0.75 0.439601
Target:  5'- gGCAcguGCGGCugAGCAGCa--GGCACGc -3'
miRNA:   3'- -CGUu--CGCCGugUUGUCGgugUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 117811 0.75 0.439601
Target:  5'- cGCAAGCGGCGCAcCAGCgACG--ACGa -3'
miRNA:   3'- -CGUUCGCCGUGUuGUCGgUGUcgUGC- -5'
21208 3' -54.7 NC_004778.3 + 112386 0.75 0.448942
Target:  5'- cGCAAGC-GCGCGgucgcGCAGCUuagGCGGCACGu -3'
miRNA:   3'- -CGUUCGcCGUGU-----UGUCGG---UGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 43123 0.74 0.467945
Target:  5'- cGCAAGCGcuuCGACGgcGCCGCGGCGCGc -3'
miRNA:   3'- -CGUUCGCcguGUUGU--CGGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 76635 0.74 0.467945
Target:  5'- aGCGGGCGGcCGgAACGGCCGCucgguaauuGGCGCc -3'
miRNA:   3'- -CGUUCGCC-GUgUUGUCGGUG---------UCGUGc -5'
21208 3' -54.7 NC_004778.3 + 41853 0.74 0.48149
Target:  5'- gGCucGCGGCGCAACccgucguaauggaaaGGCCAUcuAGCACa -3'
miRNA:   3'- -CGuuCGCCGUGUUG---------------UCGGUG--UCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.